Name: Flavobacterium naphthae Brt-M
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158777

Type strain:

Species: Flavobacterium naphthae

Strain Designation: Brt-M

Culture col. no.: KEMB 9005-692, KACC 19393, JCM 32171

Strain history: J. Kim; Kyonggi Univ., South Korea; Brt-M.

NCBI tax ID(s): 2057005 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Flavobacterium naphthae Brt-M is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from oil-contaminated soil.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium naphthae**
	Full Scientific Name (LPSN)	Flavobacterium naphthae Chaudhary and Kim 2018

Synonym

Paenimyroides naphthae

Information on morphological and physiological properties Morphology

[Ref.: #65531]	Gram stain	negative

[Ref.: #65531]	Cell shape	rod-shaped

[Ref.: #65531]	Motility	no

[Ref.: #65531]	Colony size	1.0-1.5 mm
[Ref.: #65531]	Colony color	yellow
[Ref.: #65531]	Colony shape	circular
[Ref.: #65531]	Cultivation medium used	TSA

[Ref.: #65531]	Pigment production	yes
[Ref.: #65531]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

VIA

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

SMA

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Culture medium growth

		Temperature
[Ref.: #65531]	growth	15-45 °C
[Ref.: #65531]	optimum	25-35 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65531]			optimum	7.0-8.0
[Ref.: #65531]			growth	5.5-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65531]		NaCl		growth	0-1	%
[Ref.: #65531]		NaCl		optimum	0	%

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Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65531]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #65531]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #65531]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #65531]	adipate ChEBI	-	assimilation
[Ref.: #65531]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #65531]	casein	-	hydrolysis
[Ref.: #65531]	chitin ChEBI	-	hydrolysis
[Ref.: #65531]	D-glucose ChEBI	-	assimilation
[Ref.: #65531]	D-mannitol ChEBI	-	assimilation
[Ref.: #65531]	D-mannose ChEBI	-	assimilation
[Ref.: #65531]	D-ribose ChEBI	-	assimilation
[Ref.: #65531]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65531]	decanoate ChEBI	-	assimilation
[Ref.: #65531]	dna ChEBI	-	hydrolysis
[Ref.: #65531]	esculin ChEBI	+/-	hydrolysis
[Ref.: #65531]	gelatin ChEBI	+/-	hydrolysis
[Ref.: #65531]	glucose ChEBI	-	fermentation
[Ref.: #65531]	glycogen ChEBI	-	assimilation
[Ref.: #65531]	itaconate ChEBI	-	assimilation
[Ref.: #65531]	L-alanine ChEBI	-	assimilation
[Ref.: #65531]	L-arabinose ChEBI	-	assimilation
[Ref.: #65531]	L-fucose ChEBI	-	assimilation
[Ref.: #65531]	L-histidine ChEBI	-	assimilation
[Ref.: #65531]	L-proline ChEBI	-	assimilation
[Ref.: #65531]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65531]	L-serine ChEBI	-	assimilation
[Ref.: #65531]	lactate ChEBI	-	assimilation
[Ref.: #65531]	malate ChEBI	-	assimilation
[Ref.: #65531]	maltose ChEBI	-	assimilation
[Ref.: #65531]	melibiose ChEBI	-	assimilation
[Ref.: #65531]	myo-inositol ChEBI	-	assimilation
[Ref.: #65531]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65531]	nitrate ChEBI	-	reduction
[Ref.: #65531]	phenylacetate ChEBI	-	assimilation
[Ref.: #65531]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #65531]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #65531]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65531]	propionate ChEBI	-	assimilation
[Ref.: #65531]	salicin ChEBI	-	assimilation
[Ref.: #65531]	sodium acetate ChEBI	-	assimilation
[Ref.: #65531]	sodium citrate ChEBI	-	assimilation
[Ref.: #65531]	sodium malonate ChEBI	-	assimilation
[Ref.: #65531]	starch ChEBI	-	hydrolysis
[Ref.: #65531]	suberic acid ChEBI	-	assimilation
[Ref.: #65531]	sucrose ChEBI	+/-	assimilation
[Ref.: #65531]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65531]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65531]	tyrosine ChEBI	+/-	hydrolysis
[Ref.: #65531]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65531]	acetoin ChEBI	no
[Ref.: #65531]	hydrogen sulfide ChEBI	no
[Ref.: #65531]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #65531]		acetoin ChEBI	-
[Ref.: #65531]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #65531]	acid phosphatase	-	3.1.3.2
[Ref.: #65531]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65531]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65531]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65531]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65531]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65531]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65531]	beta-galactosidase	-	3.2.1.23
[Ref.: #65531]	beta-glucosidase	-	3.2.1.21
[Ref.: #65531]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65531]	catalase	+	1.11.1.6
[Ref.: #65531]	cystine arylamidase	-	3.4.11.3
[Ref.: #65531]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65531]	esterase (C 4)	+
[Ref.: #65531]	esterase Lipase (C 8)	+
[Ref.: #65531]	leucine arylamidase	+	3.4.11.1
[Ref.: #65531]	lipase (C 14)	+
[Ref.: #65531]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65531]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #65531]	trypsin	-	3.4.21.4
[Ref.: #65531]	urease	-	3.5.1.5
[Ref.: #65531]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	52.2
C17:1 iso ω9c / C16:0 10-methyl	14.5
C17:0 iso 3OH	13.1
C16:1ω7c / C16:1ω6c	9.2
C15:0 iso 3OH	5.7
C16:0	0.8
C15:0 anteiso	0.8
C18:1ω5c	0.6
C17:0 anteiso	0.6
C17:0 iso	0.5
C13:0 iso	0.3
C16:0 3OH	0.3
C17:0 2OH	0.2
C15:0 2OH	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65531]	Sample type/isolated from	oil-contaminated soil
[Ref.: #65531]	Geographic location (country and/or sea, region)	Biratnagar, Morang
[Ref.: #65531]	Country	Nepal
[Ref.: #65531]	Country ISO 3 Code	NPL
[Ref.: #65531]	Continent	Asia
[Ref.: #65531]	Enrichment culture	TSA

[Ref.: #67770]	Sample type/isolated from	Oil-contaminated soil of Biratnagar
[Ref.: #67770]	Geographic location (country and/or sea, region)	Morang
[Ref.: #67770]	Country	Nepal
[Ref.: #67770]	Country ISO 3 Code	NPL
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65531]	Paenimyroides naphthae strain Brt-M 16S ribosomal RNA gene, partial sequence	MF405102		GenBank ENA

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GC-content

37.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KEMB 9005-692, KACC 19393, JCM 32171

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium naphthae sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002504	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65531

Dhiraj Kumar Chaudhary and Jaisoo Kim: Flavobacterium naphthae sp. nov., isolated from oil-contaminated soil. IJSEM 68: 305 - 309 2018 ( DOI 10.1099/ijsem.0.002504 , PubMed 29185939 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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