Name: Aquicoccus porphyridii L1 8-17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158773

Type strain:

Species: Aquicoccus porphyridii

Strain Designation: L1 8-17

Culture col. no.: KACC 18806, JCM 31543

Strain history: C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; L1 8-17.

NCBI tax ID(s): 1852029 (species)

Section

Aquicoccus porphyridii L1 8-17 is an obligate aerobe, Gram-negative, coccus-shaped bacterium that was isolated from from a red alga Porphyridium marinum.

coccus-shaped
Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Aquicoccus*
	Species	**Aquicoccus porphyridii**
	Full Scientific Name (LPSN)	Aquicoccus porphyridii Feng et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65527]	Gram stain	negative

[Ref.: #65527]	Cell shape	coccus-shaped

[Ref.: #65527]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65527]

Culture medium

[Ref.: #65527]

Culture medium growth

		Temperature
[Ref.: #65527]	growth	20-40 °C
[Ref.: #65527]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #65527]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65527]			optimum	7.0-8.0
[Ref.: #65527]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65527]

Oxygen tolerance

obligate aerobe

[Ref.: #65527]

Halophily / tolerance level

slightly halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65527]		NaCl		growth	0-7.0	%(w/v)
[Ref.: #65527]		NaCl		optimum	2-3	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65527]	adipate ChEBI	-	assimilation
[Ref.: #65527]	casein	-	hydrolysis
[Ref.: #65527]	D-glucose ChEBI	-	assimilation
[Ref.: #65527]	D-mannitol ChEBI	-	assimilation
[Ref.: #65527]	D-mannose ChEBI	-	assimilation
[Ref.: #65527]	decanoate ChEBI	-	assimilation
[Ref.: #65527]	esculin ChEBI	-	hydrolysis
[Ref.: #65527]	L-arabinose ChEBI	+	assimilation
[Ref.: #65527]	malate ChEBI	+	assimilation
[Ref.: #65527]	maltose ChEBI	+	assimilation
[Ref.: #65527]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65527]	nitrate ChEBI	-	reduction
[Ref.: #65527]	phenylacetate ChEBI	+	assimilation
[Ref.: #65527]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65527]	sodium citrate ChEBI	-	assimilation
[Ref.: #65527]	starch ChEBI	-	hydrolysis
[Ref.: #65527]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65527]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65527]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65527]		bacteriochlorophyll alpha ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65527]	acid phosphatase	+	3.1.3.2
[Ref.: #65527]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65527]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65527]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65527]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65527]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65527]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65527]	beta-galactosidase	-	3.2.1.23
[Ref.: #65527]	beta-glucosidase	-	3.2.1.21
[Ref.: #65527]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65527]	catalase	+	1.11.1.6
[Ref.: #65527]	cystine arylamidase	-	3.4.11.3
[Ref.: #65527]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65527]	esterase (C 4)	+
[Ref.: #65527]	esterase Lipase (C 8)	+
[Ref.: #65527]	leucine arylamidase	+	3.4.11.1
[Ref.: #65527]	lipase (C 14)	-
[Ref.: #65527]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65527]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65527]	trypsin	-	3.4.21.4
[Ref.: #65527]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65527]

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	86.3
C16:0	4.7
C12:1 3OH	1.9
C18:0	1.5
C17:1 anteiso ω9c	0.8
C18:0 iso	0.5
C16:1ω7c / C16:1ω6c	0.4
C12:0 3OH	0.4
cyclo-C19:0ω8c	0.4
C17:0	0.4
C10:0	0.4
C10:0 3OH	0.3
11-methyl C18:1ω7c	0.3
C10:0 iso	0.2
C20:1ω7c	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65527]	Sample type/isolated from	from a red alga Porphyridium marinum
[Ref.: #65527]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #65527]	Country	Republic of Korea
[Ref.: #65527]	Country ISO 3 Code	KOR
[Ref.: #65527]	Continent	Asia
[Ref.: #65527]	Geographic location	36.9044°/126.1980°
[Ref.: #65527]	Enrichment culture	artificial seawater (ASW) on marine agar (MA)
[Ref.: #65527]	Enrichment culture composition	ASW (per liter): 20 g NaCl, 2.9 g MgSO4 , 4.53 g MgCl2, 6H2O, 0.64 g KCl and 1.75 g CaCl2 . 2H2O
[Ref.: #65527]	Enrichment culture duration	3 days
[Ref.: #65527]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Marine red alga, Porphyridium marinum
[Ref.: #67770]	Host species	Porphyridium marinum
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Red algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF113254 (>99% sequence identity) for Aquicoccus porphyridii subclade from Microbeatlas

Aquatic Samples	158
Soil Samples	1
Animal Samples	6
Plant Samples
Total Samples	165

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65527]	16S rRNA gene sequence	MF113254		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aquicoccus porphyridii L1 8-17	GCA_008369105	contig	GenBank	1852029 tax ID	*

[Ref.: #65527]	GC-content	59.3 mol%	fluorimetric
[Ref.: #67770]	GC-content	59.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquicoccus porphyridii L1 8-17 NCBI: GCA_008369105.1
[Ref.: #69480]	motile	no	61.448	yes
[Ref.: #69480]	flagellated	no	79.953	no
[Ref.: #69480]	gram-positive	no	97.455	yes
[Ref.: #69480]	anaerobic	no	98.238	no
[Ref.: #69480]	aerobic	yes	91.849	no
[Ref.: #69480]	halophile	yes	70.276	no
[Ref.: #69480]	spore-forming	no	95.505	no
[Ref.: #69480]	glucose-util	yes	54.494	no
[Ref.: #69480]	thermophile	no	95.095	yes
[Ref.: #69480]	glucose-ferment	no	90.16	no

Availability in culture collections External links

[Ref.: #65527]

Culture collection no.

KACC 18806, JCM 31543

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mameliella sediminis sp. nov., a novel polyhydroxyalkanoate-accumulating bacterium.	Zheng WS, Zhai SQ, Zhang MJ, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005274	2022	*
Phylogeny	Aquicoccus porphyridii gen. nov., sp. nov., isolated from a small marine red alga, Porphyridium marinum.	Feng T, Kim KH, Jeong SE, Kim W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002498	2017	*
Phylogeny	Marimonas lutisalis sp. nov., isolated from a tidal mudflat and emended description of the genus Marimonas.	Lee SD, Jeon D, Kim YJ, Kim IS, Choe H, Kim JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003749	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65527

Tingye Feng, Kyung Hyun Kim, Sang Eun Jeong, Wonyong Kim and Che Ok Jeon: Aquicoccus porphyridii gen. nov., sp. nov., isolated from a small marine red alga, Porphyridium marinum. IJSEM 68: 283 - 288 2018 ( DOI 10.1099/ijsem.0.002498 , PubMed 29160201 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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