Aquicoccus porphyridii (KACC 18806, JCM 31543, L1 8-17)

Name: Aquicoccus porphyridii (KACC 18806, JCM 31543, L1 8-17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158773

Type strain

Strain Designation L1 8-17

Culture col. no. KACC 18806 JCM 31543 L1 8-17

NCBI tax ID(s) 1852029

Special Collections JCM Literature strains

History JCM <-- C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; L1 8-17.

Links

Aquicoccus porphyridii L1 8-17 is an obligate aerobe, Gram-negative, coccus-shaped bacterium that was isolated from from a red alga Porphyridium marinum.

Gram-negative coccus-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 394712

JCM 31543

@ref 20215

Last LPSN update 2026-05-29 08:44:02

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Aquicoccus

Species Aquicoccus porphyridii

Full scientific name Aquicoccus porphyridii Feng et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
65527	negative	coccus-shaped
125438	negative			97

Culture and growth conditions

Culture medium

@ref	Name	Growth
65527	MB

Culture temp

@ref	Growth	Type	Temperature (°C)
65527	positive	growth	20-40
65527	positive	optimum	37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
65527	positive	optimum	7.0-8.0
65527	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

65527

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97.141

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
65527		NaCl	positive	growth	0-7.0 %(w/v)
65527	slightly halophilic	NaCl	positive	optimum	2-3 %(w/v)

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65527	17128 ChEBI	adipate	-	assimilation
65527		casein	-	hydrolysis
65527	17634 ChEBI	D-glucose	-	assimilation
65527	16899 ChEBI	D-mannitol	-	assimilation
65527	16024 ChEBI	D-mannose	-	assimilation
65527	27689 ChEBI	decanoate	-	assimilation
65527	4853 ChEBI	esculin	-	hydrolysis
65527	30849 ChEBI	L-arabinose	+	assimilation
65527	25115 ChEBI	malate	+	assimilation
65527	17306 ChEBI	maltose	+	assimilation
65527	506227 ChEBI	N-acetylglucosamine	-	assimilation
65527	17632 ChEBI	nitrate	-	reduction
65527	18401 ChEBI	phenylacetate	+	assimilation
65527	32032 ChEBI	potassium gluconate	-	assimilation
65527	53258 ChEBI	sodium citrate	-	assimilation
65527	28017 ChEBI	starch	-	hydrolysis
65527	53424 ChEBI	tween 20	-	hydrolysis
65527	53426 ChEBI	tween 80	-	hydrolysis
65527	18186 ChEBI	tyrosine	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65527	30033 ChEBI	bacteriochlorophyll alpha

Enzymes

@ref	Value	Activity	Ec
65527	acid phosphatase	+	3.1.3.2
65527	alkaline phosphatase	+	3.1.3.1
65527	alpha-chymotrypsin	-	3.4.21.1
65527	alpha-fucosidase	-	3.2.1.51
65527	alpha-galactosidase	-	3.2.1.22
65527	alpha-glucosidase	-	3.2.1.20
65527	alpha-mannosidase	-	3.2.1.24
65527	beta-galactosidase	-	3.2.1.23
65527	beta-glucosidase	-	3.2.1.21
65527	beta-glucuronidase	-	3.2.1.31
65527	catalase	+	1.11.1.6
65527	cystine arylamidase	-	3.4.11.3
65527	cytochrome oxidase	+	1.9.3.1
65527	esterase (C 4)	+
65527	esterase Lipase (C 8)	+
65527	leucine arylamidase	+	3.4.11.1
65527	lipase (C 14)	-
65527	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65527	naphthol-AS-BI-phosphohydrolase	+
65527	trypsin	-	3.4.21.4
65527	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65527

Fatty acid	Percentage
C18:1ω7c / C18:1ω6c	86.3
C16:0	4.7
C12:1 3OH	1.9
C18:0	1.5
C17:1 anteiso ω9c	0.8
C18:0 iso	0.5
C16:1ω7c / C16:1ω6c	0.4
C12:0 3OH	0.4
cyclo-C19:0ω8c	0.4
C17:0	0.4
C10:0	0.4
C10:0 3OH	0.3
11-methyl C18:1ω7c	0.3
C10:0 iso	0.2
C20:1ω7c	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Host species
65527	from a red alga Porphyridium marinum	Yellow Sea	Republic of Korea	KOR	Asia	36.9044	126.198 36.9044/126.198	artificial seawater (ASW) on marine agar (MA)	ASW (per liter): 20 g NaCl, 2.9 g MgSO4 , 4.53 g MgCl2, 6H2O, 0.64 g KCl and 1.75 g CaCl2 . 2H2O	3 days	25
67770	Marine red alga, Porphyridium marinum		Republic of Korea	KOR	Asia							Porphyridium marinum

Taxonmaps

69479

Global distribution of 16S sequence MF113254 (>99% sequence identity) for Aquicoccus porphyridii subclade from Microbeatlas

Aquatic Samples	158
Soil Samples	1
Animal Samples	6
Plant Samples	0
Total Samples	165

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM836910v1 assembly for Aquicoccus porphyridii L1 8-17	contig	GCA_008369105	1852029.3	2887319735	1852029	26.68

16S sequences

@ref	Description	Accession	Database
65527	Aquicoccus porphyridii strain L1 8-17 16S ribosomal RNA gene, partial sequence	MF113254

GC content

@ref	GC-content (mol%)	Method
65527	59.3	fluorimetric
67770	59.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM836910v1 assembly for Aquicoccus porphyridii L1 8-17
NCBI: GCA_008369105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	83.54	no
125439	motility	BacteriaNetⓘ	yes	58.06	no
125439	gram_stain	BacteriaNetⓘ	negative	87.70	no
125439	spore_formation	BacteriaNetⓘ	no	97.14	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aquicoccus porphyridii L1 8-17
NCBI: GCA_008369105.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	94.13	yes
125438	aerobic	aerobicⓘ	yes	85.62	yes
125438	spore-forming	spore-formingⓘ	no	89.93	no
125438	thermophilic	thermophileⓘ	no	95.98	yes
125438	flagellated	motile2+ⓘ	yes	56.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mameliella sediminis sp. nov., a novel polyhydroxyalkanoate-accumulating bacterium.	Zheng WS, Zhai SQ, Zhang MJ, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005274	2022
Phylogeny	Aquicoccus porphyridii gen. nov., sp. nov., isolated from a small marine red alga, Porphyridium marinum.	Feng T, Kim KH, Jeong SE, Kim W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002498	2017
Phylogeny	Marimonas lutisalis sp. nov., isolated from a tidal mudflat and emended description of the genus Marimonas.	Lee SD, Jeon D, Kim YJ, Kim IS, Choe H, Kim JS	Int J Syst Evol Microbiol	10.1099/ijsem.0.003749	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65527	Tingye Feng, Kyung Hyun Kim, Sang Eun Jeong, Wonyong Kim and Che Ok Jeon: Aquicoccus porphyridii gen. nov., sp. nov., isolated from a small marine red alga, Porphyridium marinum. IJSEM 68: 283 - 288 2018 ( DOI 10.1099/ijsem.0.002498 , PubMed 29160201 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquicoccus porphyridii (KACC 18806, JCM 31543, L1 8-17)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_008369105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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