Haloplanus salinarum (JCM 31424, KCCM 43210, SP28)

Name: Haloplanus salinarum (JCM 31424, KCCM 43210, SP28)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158747

Type strain

Strain Designation SP28

Culture col. no. JCM 31424 KCCM 43210 SP28

NCBI tax ID(s) 1912324

Special Collections JCM Literature strains

History S.-J. Park; Dept. of Biol., Jeju Natl. Univ., South Korea; SP28.

Links

Haloplanus salinarum SP28 is an obligate aerobe, Gram-negative, motile archaeon that forms circular colonies and was isolated from brine sample from a solar saltern.

Gram-negative motile pleomorphic-shaped colony-forming obligate aerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 133703

JCM 31424

@ref 20215

Last LPSN update 2026-02-09 11:38:24

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Haloplanus

Species Haloplanus salinarum

Full scientific name Haloplanus salinarum Hwang et al. 2017

Synonyms (1)

Haloplanus rallus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
65498	negative	0.6-3.5 µm	0.6-2.3 µm	pleomorphic-shaped
125439	negative					93.8

Colony morphology

@ref	Colony color	Colony shape
65498	red	circular

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
65498	DBCM2 agar		Containing per litre, 833 ml concentrated salt water (30 %, w/v), 1 ml FeCl2 solution, 1 ml trace element solution, 0.25 g peptone (Oxoid), 0.05 g yeast extract (Difco), 5 ml 1 M NH4Cl, 2 ml potassium phosphate buffer, 3 ml vitamin solution, 10 ml 1 M sodium pyruvate solution, 1.6 % (w/v) agar.

Culture temp

@ref	Growth	Type	Temperature (°C)
65498	positive	growth	25-50
65498	positive	optimum	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
65498	positive	optimum	8.0
65498	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

65498

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		93.6

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
65498		NaCl	positive	growth	2.5-4.5 M
65498	extremely halophilic	NaCl	positive	optimum	3.1 M
65498		MgCl2	positive	growth	0.05-0.5 M
65498		MgCl2	positive	optimum	0.1 M

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65498		casein	-	hydrolysis
65498	15824 ChEBI	D-fructose	-	builds acid from
65498	15824 ChEBI	D-fructose	-	carbon source
65498	15824 ChEBI	D-fructose	-	energy source
65498	12936 ChEBI	D-galactose	-	builds acid from
65498	12936 ChEBI	D-galactose	-	carbon source
65498	12936 ChEBI	D-galactose	-	energy source
65498	17634 ChEBI	D-glucose	-	builds acid from
65498	17634 ChEBI	D-glucose	-	carbon source
65498	17634 ChEBI	D-glucose	-	energy source
65498	65327 ChEBI	D-xylose	+	carbon source
65498	65327 ChEBI	D-xylose	+	energy source
65498	28262 ChEBI	dimethyl sulfoxide	-	electron acceptor
65498	16449 ChEBI	dl-alanine	+	carbon source
65498	16449 ChEBI	dl-alanine	+	energy source
65498	16991 ChEBI	dna	-	hydrolysis
65498	5291 ChEBI	gelatin	-	hydrolysis
65498	15428 ChEBI	glycine	-	carbon source
65498	15428 ChEBI	glycine	-	energy source
65498	16467 ChEBI	L-arginine	-	carbon source
65498	16467 ChEBI	L-arginine	-	electron acceptor
65498	16467 ChEBI	L-arginine	-	energy source
65498	29991 ChEBI	L-aspartate	-	carbon source
65498	29991 ChEBI	L-aspartate	-	energy source
65498	18050 ChEBI	L-glutamine	-	carbon source
65498	18050 ChEBI	L-glutamine	-	energy source
65498	18019 ChEBI	L-lysine	+	carbon source
65498	18019 ChEBI	L-lysine	+	energy source
65498	17115 ChEBI	L-serine	-	carbon source
65498	17115 ChEBI	L-serine	-	energy source
65498	16828 ChEBI	L-tryptophan	-	carbon source
65498	16828 ChEBI	L-tryptophan	-	energy source
65498	25115 ChEBI	malate	-	carbon source
65498	25115 ChEBI	malate	-	energy source
65498	17306 ChEBI	maltose	-	builds acid from
65498	17306 ChEBI	maltose	+	carbon source
65498	17306 ChEBI	maltose	+	energy source
65498	17632 ChEBI	nitrate	-	electron acceptor
65498	17632 ChEBI	nitrate	-	reduction
65498	17272 ChEBI	propionate	+	carbon source
65498	17272 ChEBI	propionate	+	energy source
65498	16634 ChEBI	raffinose	-	carbon source
65498	16634 ChEBI	raffinose	-	energy source
65498	15963 ChEBI	ribitol	-	carbon source
65498	15963 ChEBI	ribitol	-	energy source
65498	28017 ChEBI	starch	-	hydrolysis
65498	30031 ChEBI	succinate	+	carbon source
65498	30031 ChEBI	succinate	+	energy source
65498	17992 ChEBI	sucrose	-	carbon source
65498	17992 ChEBI	sucrose	-	energy source
65498	53424 ChEBI	tween 20	-	hydrolysis
65498	53423 ChEBI	tween 40	-	hydrolysis
65498	53426 ChEBI	tween 80	-	hydrolysis
65498	17151 ChEBI	xylitol	-	carbon source
65498	17151 ChEBI	xylitol	-	energy source

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Resistance conc.	Sensitivity conc.
65498	338412		(-)-anisomycin		30 µg (disc)
65498	28971		ampicillin	10 µg (disc)
65498	28669		bacitracin		0.04 Unit (disc)
65498	17698		chloramphenicol	10 µg (disc)
65498	48923		erythromycin		10 µg (disc)
65498	17833		gentamicin	10 µg (disc)
65498	6104		kanamycin	30 µg (disc)
65498	7507		neomycin	30 µg (disc)
65498	28368		novobiocin		30 µg (disc)
65498	17334		penicillin	10 Unit (disc)
65498	28077		rifampicin	10 µg (disc)
65498	17076		streptomycin	10 µg (disc)
65498	9332	26	sulfamethoxazole	23.75 µg (disc)
65498	27902		tetracycline	30 µg (disc)
65498	45924	26	trimethoprim	1.25 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65498	16136 ChEBI	hydrogen sulfide
65498	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65498	alkaline phosphatase	-	3.1.3.1
65498	catalase	+	1.11.1.6
65498	cytochrome oxidase	+	1.9.3.1
65498	lysine decarboxylase	-	4.1.1.18
65498	ornithine decarboxylase	-	4.1.1.17
65498	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65498	brine sample from a solar saltern	Gomso-ri, Buan	Republic of Korea	KOR	Asia	35.5833	126.6 35.5833/126.6	modified-SG medium	Modified-SG medium which contained the following ingredients (per litre): 7.5g casamino acids, 10g yeast extract, 3g trisodium citrate, 20g MgSO4 . 7H2O, 2g KCl, 0.05g FeSO4 . 7H2O, 200g NaCl and 0.1g NH4Cl. The pH was adjusted to 7.5 with 1 M NaOH solution.	2 weeks	37	After three subcultures, the enrichment culture was plated onto modified-SG agar plates (1.6 % (w/v) agar). The plates were incubated in the dark at 37 °C for at least 2 weeks under aerobic conditions.
67770	Gomso solar saltern		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KX151776 (>99% sequence identity) for Haloplanus from Microbeatlas

Aquatic Samples	25
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	26

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2449817v1 assembly for Haloplanus salinarum JCM 31424	complete	GCA_024498175	1912324.3	8057453429	1912324	97.58

16S sequences

@ref	Description	Accession	Database
65498	Haloplanus salinarum strain SP28 16S ribosomal RNA gene, partial sequence	KX151776

GC content

@ref	GC-content (mol%)	Method
65498	66.2	fluorimetric
67770	66.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloplanus salinarum JCM 31424
NCBI: GCA_024498175

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.60	no
125439	motility	BacteriaNetⓘ	yes	58.90	no
125439	gram_stain	BacteriaNetⓘ	negative	93.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	69.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Haloplanus salinarum JCM 31424
NCBI: GCA_024498175.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	76.19	no
125438	anaerobic	anaerobicⓘ	no	80.52	yes
125438	aerobic	aerobicⓘ	yes	75.67	yes
125438	spore-forming	spore-formingⓘ	no	87.79	no
125438	thermophilic	thermophileⓘ	no	81.83	no
125438	flagellated	motile2+ⓘ	no	86.03	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern.	Hwang HB, Kim YE, Koh HW, Song HS, Roh SW, Kim SJ, Nam SW, Park SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002313	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65498	Han-Bit Hwang, Ye-Eun Kim, Hyeon-Woo Koh, Hye Seon Song, Seong Woon Roh, So-Jeong Kim, Seung Won Nam and Soo-Je Park: Haloplanus salinarum sp. nov., an extremely halophilic archaeon isolated from a solar saltern. IJSEM 67: 4456 - 4461 2017 ( DOI 10.1099/ijsem.0.002313 , PubMed 28945530 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloplanus salinarum (JCM 31424, KCCM 43210, SP28)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_024498175

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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