Name: Spirosoma horti S7-3-19
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158698

Type strain:

Species: Spirosoma horti

Strain Designation: S7-3-19

Culture col. no.: KCTC 52728, JCM 32131

Strain history: <- Jung Hee-Young, Kyungpook National Univ.

NCBI tax ID(s): 1987382 (species)

Section

Spirosoma horti S7-3-19 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from an apple orchard soil sample.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma horti**
	Full Scientific Name (LPSN)	Spirosoma horti Li et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65437]	Gram stain	negative

[Ref.: #65437]	Cell length	2.6-8.5 µm

[Ref.: #65437]	Cell width	0.9-1.1 µm

[Ref.: #65437]	Cell shape	rod-shaped

[Ref.: #65437]	Motility	yes

[Ref.: #65437]	Flagellum arrangement	gliding

[Ref.: #65437]	Colony color	yellow
[Ref.: #65437]	Colony shape	circular
[Ref.: #65437]	Incubation period	2 days
[Ref.: #65437]	Cultivation medium used	Reasoner's 2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Tryptic Soy Agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65437]		growth	10-30 °C
[Ref.: #65437]	no	growth	4 °C
[Ref.: #65437]	no	growth	37 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #67771]		growth	25 °C

[Ref.: #65437]	Temperature range	psychrophilic
[Ref.: #65437]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #65437]		growth	6-7
[Ref.: #65437]	no	growth	5
[Ref.: #65437]	no	growth	8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65437]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65437]		NaCl		growth	1	%

[Ref.: #65437]	Observation	phosphatidylethanolamine, an unidentified aminophospholipid, an unidentified phospholipid and two unidentified lipids are the major polar lipids
[Ref.: #65437]	Observation	the predominant isoprenoid quinone is MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65437]	1-o-methyl alpha-galactopyranoside	+	builds acid from
[Ref.: #65437]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #65437]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65437]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #65437]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #65437]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #65437]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #65437]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #65437]	adipate ChEBI	-	assimilation
[Ref.: #65437]	amygdalin ChEBI	+	builds acid from
[Ref.: #65437]	arbutin ChEBI	+	builds acid from
[Ref.: #65437]	cellobiose ChEBI	+	builds acid from
[Ref.: #65437]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65437]	D-arabitol ChEBI	+	builds acid from
[Ref.: #65437]	D-fructose ChEBI	+	builds acid from
[Ref.: #65437]	D-fucose ChEBI	+	builds acid from
[Ref.: #65437]	D-galactose ChEBI	+	builds acid from
[Ref.: #65437]	D-glucose ChEBI	+	assimilation
[Ref.: #65437]	D-glucose ChEBI	+	builds acid from
[Ref.: #65437]	D-mannitol ChEBI	-	assimilation
[Ref.: #65437]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65437]	D-mannose ChEBI	+	assimilation
[Ref.: #65437]	D-mannose ChEBI	+	builds acid from
[Ref.: #65437]	D-ribose ChEBI	-	assimilation
[Ref.: #65437]	D-ribose ChEBI	+	builds acid from
[Ref.: #65437]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65437]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65437]	D-tagatose ChEBI	+	builds acid from
[Ref.: #65437]	D-xylose ChEBI	+	builds acid from
[Ref.: #65437]	decanoate ChEBI	-	assimilation
[Ref.: #65437]	erythritol ChEBI	+	builds acid from
[Ref.: #65437]	esculin ChEBI	+	builds acid from
[Ref.: #65437]	galactitol ChEBI	-	builds acid from
[Ref.: #65437]	gelatin ChEBI	+	hydrolysis
[Ref.: #65437]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65437]	gluconate ChEBI	-	assimilation
[Ref.: #65437]	gluconate ChEBI	-	builds acid from
[Ref.: #65437]	glycerol ChEBI	+	builds acid from
[Ref.: #65437]	glycogen ChEBI	+	assimilation
[Ref.: #65437]	glycogen ChEBI	+	builds acid from
[Ref.: #65437]	inulin ChEBI	+	builds acid from
[Ref.: #65437]	isocitrate ChEBI	-	assimilation
[Ref.: #65437]	isovalerate ChEBI	-	assimilation
[Ref.: #65437]	itaconate ChEBI	-	assimilation
[Ref.: #65437]	L-alanine ChEBI	-	assimilation
[Ref.: #65437]	L-arabinose ChEBI	+	assimilation
[Ref.: #65437]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65437]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65437]	L-fucose ChEBI	-	assimilation
[Ref.: #65437]	L-fucose ChEBI	+	builds acid from
[Ref.: #65437]	L-histidine ChEBI	-	assimilation
[Ref.: #65437]	L-malate ChEBI	-	assimilation
[Ref.: #65437]	L-proline ChEBI	-	assimilation
[Ref.: #65437]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65437]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #65437]	L-serine ChEBI	-	assimilation
[Ref.: #65437]	L-sorbose ChEBI	+	builds acid from
[Ref.: #65437]	L-xylose ChEBI	+	builds acid from
[Ref.: #65437]	lactate ChEBI	-	assimilation
[Ref.: #65437]	lactose ChEBI	+	builds acid from
[Ref.: #65437]	malonate ChEBI	-	assimilation
[Ref.: #65437]	maltose ChEBI	+	assimilation
[Ref.: #65437]	maltose ChEBI	+	builds acid from
[Ref.: #65437]	melezitose ChEBI	+	builds acid from
[Ref.: #65437]	melibiose ChEBI	+	assimilation
[Ref.: #65437]	melibiose ChEBI	+	builds acid from
[Ref.: #65437]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #65437]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65437]	myo-inositol ChEBI	-	assimilation
[Ref.: #65437]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65437]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65437]	nitrate ChEBI	-	reduction
[Ref.: #65437]	phenylacetate ChEBI	-	assimilation
[Ref.: #65437]	propionate ChEBI	-	assimilation
[Ref.: #65437]	raffinose ChEBI	+	builds acid from
[Ref.: #65437]	ribitol ChEBI	-	builds acid from
[Ref.: #65437]	salicin ChEBI	-	assimilation
[Ref.: #65437]	salicin ChEBI	+	builds acid from
[Ref.: #65437]	sodium acetate ChEBI	-	assimilation
[Ref.: #65437]	starch ChEBI	+	builds acid from
[Ref.: #65437]	suberic acid ChEBI	-	assimilation
[Ref.: #65437]	sucrose ChEBI	+	assimilation
[Ref.: #65437]	sucrose ChEBI	+	builds acid from
[Ref.: #65437]	trehalose ChEBI	+	builds acid from
[Ref.: #65437]	turanose ChEBI	+	builds acid from
[Ref.: #65437]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65437]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65437]	acid phosphatase	+	3.1.3.2
[Ref.: #65437]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65437]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65437]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65437]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65437]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65437]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65437]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65437]	beta-galactosidase	+	3.2.1.23
[Ref.: #65437]	beta-glucosidase	+	3.2.1.21
[Ref.: #65437]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65437]	catalase	+	1.11.1.6
[Ref.: #65437]	cystine arylamidase	+	3.4.11.3
[Ref.: #65437]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65437]	esterase	+
[Ref.: #65437]	esterase (C 4)	+
[Ref.: #65437]	esterase Lipase (C 8)	+
[Ref.: #65437]	leucine arylamidase	+	3.4.11.1
[Ref.: #65437]	lipase (C 14)	-
[Ref.: #65437]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65437]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65437]	trypsin	+	3.4.21.4
[Ref.: #65437]	urease	-	3.5.1.5
[Ref.: #65437]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65437]

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	46.7
C16:1ω5c	23.8
C15:0 iso	7
C17:0 iso3-OH	5.4
C16:0	3.5
C15:0 iso 3-OH	2.8
C13:0 iso	2.4
C15:0 anteiso	2.4
C16:0 3OH	1.7
C17:1 iso I and/or C17:1 anteiso B	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65437]	Sample type/isolated from	an apple orchard soil sample
[Ref.: #65437]	Geographic location (country and/or sea, region)	Gyeongsangnam-do Province
[Ref.: #65437]	Country	Republic of Korea
[Ref.: #65437]	Country ISO 3 Code	KOR
[Ref.: #65437]	Continent	Asia
[Ref.: #65437]	Geographic location	35.5888°/127.8580°
[Ref.: #65437]	Enrichment culture	Reasoner's 2A
[Ref.: #65437]	Enrichment culture duration	1 week
[Ref.: #65437]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Apple orchard soil from Gyeongsangnam-do Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Chunjeon-ri, Namsang-myeon, Geochang-gun, Gyeongsangnam-do
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Grove (Orchard)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65437]	16S rRNA gene sequence	LC269321		GenBank

[Ref.: #65437]

GC-content

48.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65437]

Culture collection no.

KCTC 52728, JCM 32131

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma horti sp. nov., isolated from apple orchard soil.	Li W, Ten LN, Lee SY, Kang IK, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002614	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65437

Weilan Li, Leonid N. Ten, Seung-Yeol Lee, In-Kyu Kang, Hee-Young Jung: Spirosoma horti sp. nov., isolated from apple orchard soil. IJSEM 68: 930 - 935 2018 ( DOI 10.1099/ijsem.0.002614 , PubMed 29458662 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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