Name: Mucilaginibacter panaciglaebae BXN5-31
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158582

Type strain:

Species: Mucilaginibacter panaciglaebae

Strain Designation: BXN5-31

Culture col. no.: KACC 14957, JCM 17085

Strain history: W.-T. Im BXN5-31.

NCBI tax ID(s): 502331 (species)

Special Collections

Section

Mucilaginibacter panaciglaebae BXN5-31 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil of a ginseng field.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter panaciglaebae**
	Full Scientific Name (LPSN)	Mucilaginibacter panaciglaebae Lee et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65292]	Gram stain	negative

[Ref.: #65292]	Cell length	1-1.5 µm

[Ref.: #65292]	Cell width	0.2-0.5 µm

[Ref.: #65292]	Cell shape	rod-shaped

[Ref.: #65292]	Motility	no

[Ref.: #65292]	Colony size	2-3 mm
[Ref.: #65292]	Colony color	pale yellow
[Ref.: #65292]	Colony shape	circular
[Ref.: #65292]	Incubation period	2 days
[Ref.: #65292]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

		Temperature
[Ref.: #65292]	growth	18-37 °C
[Ref.: #65292]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65292]			optimum	7
[Ref.: #65292]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65292]		NaCl		optimum	0	%(w/v)
[Ref.: #65292]		NaCl	no	growth	>0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65292]	2-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #65292]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #65292]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #65292]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #65292]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #65292]	acetate ChEBI	-	assimilation
[Ref.: #65292]	adipate ChEBI	+	assimilation
[Ref.: #65292]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #65292]	casein	-	hydrolysis
[Ref.: #65292]	citrate ChEBI	+	assimilation
[Ref.: #65292]	D-glucose ChEBI	+	assimilation
[Ref.: #65292]	D-mannitol ChEBI	+	assimilation
[Ref.: #65292]	D-ribose ChEBI	+	assimilation
[Ref.: #65292]	D-sorbitol ChEBI	+	assimilation
[Ref.: #65292]	decanoate ChEBI	-	assimilation
[Ref.: #65292]	dna ChEBI	-	hydrolysis
[Ref.: #65292]	esculin ChEBI	+	hydrolysis
[Ref.: #65292]	gluconate ChEBI	+	assimilation
[Ref.: #65292]	glucose ChEBI	-	builds acid from
[Ref.: #65292]	glycogen ChEBI	+	hydrolysis
[Ref.: #65292]	itaconate ChEBI	-	assimilation
[Ref.: #65292]	L-alanine 4-nitroanilide	+	assimilation
[Ref.: #65292]	L-arabinose ChEBI	+	assimilation
[Ref.: #65292]	L-fucose ChEBI	-	assimilation
[Ref.: #65292]	L-histidine ChEBI	+	assimilation
[Ref.: #65292]	L-proline ChEBI	+	assimilation
[Ref.: #65292]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65292]	L-serine ChEBI	+	assimilation
[Ref.: #65292]	lactate ChEBI	+	assimilation
[Ref.: #65292]	malate ChEBI	+	assimilation
[Ref.: #65292]	malonate ChEBI	-	assimilation
[Ref.: #65292]	maltose ChEBI	+	assimilation
[Ref.: #65292]	melibiose ChEBI	+	assimilation
[Ref.: #65292]	myo-inositol ChEBI	+	assimilation
[Ref.: #65292]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65292]	nitrate ChEBI	-	reduction
[Ref.: #65292]	phenylacetate ChEBI	+	assimilation
[Ref.: #65292]	propionate ChEBI	+	assimilation
[Ref.: #65292]	salicin ChEBI	+	assimilation
[Ref.: #65292]	starch ChEBI	-	hydrolysis
[Ref.: #65292]	suberic acid ChEBI	+	assimilation
[Ref.: #65292]	sucrose ChEBI	+	assimilation
[Ref.: #65292]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65292]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65292]	valerate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65292]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65292]	acid phosphatase	+	3.1.3.2
[Ref.: #65292]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65292]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65292]	alpha-fucosidase	+	3.2.1.51
[Ref.: #65292]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65292]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65292]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65292]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65292]	beta-galactosidase	+	3.2.1.23
[Ref.: #65292]	beta-glucosidase	+	3.2.1.21
[Ref.: #65292]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65292]	catalase	+	1.11.1.6
[Ref.: #65292]	cystine arylamidase	-	3.4.11.3
[Ref.: #65292]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65292]	esterase (C 4)	-
[Ref.: #65292]	esterase Lipase (C 8)	-
[Ref.: #65292]	leucine arylamidase	-	3.4.11.1
[Ref.: #65292]	lipase (C 14)	-
[Ref.: #65292]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65292]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65292]	trypsin	-	3.4.21.4
[Ref.: #65292]	urease	-	3.5.1.5
[Ref.: #65292]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	38.9
C16:1ω6c/C16:1ω7c	17.4
C17:0 iso 3OH	11.7
C16:1ω5c	5.6
C17:1 iso ω9c	5.2
C16:0	3.8
C15:0 iso 3OH	3.4
C17:0 iso	1.5
C15:0	1
C17:1 anteiso B/iso I	0.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65292]	Sample type/isolated from	soil of a ginseng field
[Ref.: #65292]	Geographic location (country and/or sea, region)	Baekdu Mountain
[Ref.: #65292]	Country	Republic of Korea
[Ref.: #65292]	Country ISO 3 Code	KOR
[Ref.: #65292]	Continent	Asia
[Ref.: #65292]	Geographic location	42.0666°/128.2430°
[Ref.: #65292]	Enrichment culture	R2A agar
[Ref.: #65292]	Enrichment culture duration	2-5 days
[Ref.: #65292]	Enrichment culture temperature	25 ̊C
[Ref.: #65292]	Isolation/enrichment procedure	soil samples were thoroughly suspended with sterilized water followed by serial dilution and were then spread onto R2A agar medium. The plates were incubated at room temperature for 2-5 days.

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field on Baekdu Mountain
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65292]	Mucilaginibacter panaciglaebae 16S ribosomal RNA gene, partial sequence	EU423302		GenBank ENA

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GC-content

43.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 14957, JCM 17085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil.	Seo YL, Khan SA, Kim HM, Chun BH, Han DM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004321	2020	*
Phylogeny	Mucilaginibacter corticis sp. nov., isolated from bark of Pinus koraiensis.	Akter S, Huq MA	Antonie Van Leeuwenhoek	10.1007/s10482-019-01358-5	2019	*
Phylogeny	Mucilaginibacter formosus sp. nov., a bacterium isolated from road-side soil.	Huq MA, Akter S, Lee SY	Antonie Van Leeuwenhoek	10.1007/s10482-018-1183-9	2018	*
Phylogeny	Mucilaginibacter panaciglaebae sp. nov., isolated from soil of a ginseng field.	Lee SY, Siddiqi MZ, Kim SY, Yu HS, Lee JH, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.002473	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65292

Soon Youl Lee, Muhammad Zubair Siddiqi, Sang Yong Kim, Hong Shan Yu, Jae Hak Lee, Wan-Taek Im: Mucilaginibacter panaciglaebae sp. nov., isolated from soil of a ginseng field. IJSEM 68: 149 - 154 2018 ( DOI 10.1099/ijsem.0.002473 , PubMed 29134929 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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