Mycobacterium basiliense (DSM 104308, CCOS 1136, CIP 111488)

Name: Mycobacterium basiliense (DSM 104308, CCOS 1136, CIP 111488)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158502

Type strain

Strain Designation 2013500264, 901379

Culture col. no. DSM 104308 CCOS 1136 CIP 111488 2013500264 901379

NCBI tax ID(s) 2094119

Special Collections DSMZ CIP

History DSMZ <- F. Imkamp; University of Zurich, Zurich, SWITZERLAND; Mycobacterium basiliskii<-A. Egli, University Hospital Basel, Clinical Microbiology; University Hospital Basel/Schweiz CIP <- 2017, F. Imkamp, Zurich Univ., Zurich, Switzerland: strain 901379 <- Basel Univ. Hosp., Basel, Switzerland

Links

Mycobacterium basiliense 2013500264 is a Gram-positive, rod-shaped bacterium that was isolated from human bronchoalveolar lavage.

Gram-positive rod-shaped genome sequence Bacteria

Name and taxonomic classification

SI-ID 401212

DSM 104308,CIP 111488

@ref 20215

Last LPSN update 2026-05-29 08:43:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium basiliense

Full scientific name Mycobacterium basiliense Seth-Smith et al. 2019

Morphology

Cell morphology

@ref	Confidence	Gram stain	Cell shape
125439	94.211
125438	93.5
116738		positive	rod-shaped

Multimedia

@ref:	65178
multimedia content:	DSM_104308.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_104308.jpg
caption:	Medium 645 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65178	MIDDLEBROOK MEDIUM (DSMZ Medium 645)		Medium recipe at MediaDive	Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
116738	CIP Medium 93		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
65178	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.755

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Lung
#Infection	#Medical environment	#Medical practice
#Host	#Human	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
65178	human bronchoalveolar lavage	Homo sapiens		Switzerland	CHE	Europe
116738	Human, Bronchoalveolar lavage	Homo sapiens	Basel	Switzerland	CHE	Europe	2013-09-01

Taxonmaps

69479

Global distribution of 16S sequence LR130759 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	660
Soil Samples	1494
Animal Samples	250
Plant Samples	193
Total Samples	2597

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
116738	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	MB901379 assembly for Mycobacterium basiliense	complete	GCA_900292015	2094119.3	2875597469	2094119	97.47

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: MB901379 assembly for Mycobacterium basiliense
BV-BRC: 2094119.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	89.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.76	no
125439	motility	BacteriaNetⓘ	no	94.21	no
125439	spore_formation	BacteriaNetⓘ	yes	38.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mycobacterium basiliense 901379
NCBI: GCA_900292015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.49	no
125438	anaerobic	anaerobicⓘ	no	98.64	no
125438	aerobic	aerobicⓘ	yes	80.33	no
125438	spore-forming	spore-formingⓘ	no	62.57	no
125438	thermophilic	thermophileⓘ	no	95.32	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Title	Authors	Journal	DOI	Year
Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.	Seth-Smith HMB, Imkamp F, Tagini F, Cuenod A, Homke R, Jahn K, Tschacher A, Grendelmeier P, Battig V, Erb S, Reinhard M, Rutimann G, Borrell S, Gagneux S, Casanova C, Droz S, Osthoff M, Tamm M, Nubel U, Greub G, Keller PM, Egli A.	Front Microbiol	10.3389/fmicb.2018.03184	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65178	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104308
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116738	Collection of Institut Pasteur ; Curators of the CIP; CIP 111488
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Mycobacterium basiliense (DSM 104308, CCOS 1136, CIP 111488)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900292015

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media