Name: Sphingomonas montana W16RD
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158343

Type strain:

Species: Sphingomonas montana

Strain Designation: W16RD

Culture col. no.: DSM 103337, CGMCC 1.15646

Strain history: <- P. Manandhar, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China

NCBI tax ID(s): 1843236 (species)

SI-ID 403865

DSM 103337

Special Collections

DSMZ

Section

Sphingomonas montana W16RD is a Gram-negative bacterium that was isolated from soil.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas montana**
	Full Scientific Name (LPSN)	Sphingomonas montana Manandhar et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %94.834

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65019]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #65019]

Culture medium growth

[Ref.: #65019]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65019]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65019]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.268

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68372]	amygdalin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	arbutin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	cellobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fructose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-galactose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-glucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-lyxose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-ribose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-tagatose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-xylose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	erythritol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	esculin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	galactitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	gentiobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	gluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	glycerol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	glycogen ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	inulin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-rhamnose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-sorbose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	lactose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	maltose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	melezitose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	melibiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-mannoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl beta-D-xylopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	myo-inositol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	N-acetylglucosamine ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 2-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 5-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	raffinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	ribitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	salicin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	sorbitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	starch ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	sucrose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	trehalose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	turanose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	xylitol ChEBI	-	assimilation	* from API 50CH assim
	Only first 10 entries are displayed. Click here to see all.

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #65019]	94	-	-	-	-	+	-	+	-	-	-	+	+	-	+	-	+	-	-	-	-	-	-	-	-	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65019]	Sample type/isolated from	soil
[Ref.: #65019]	Geographic location (country and/or sea, region)	Tanggula mountain in the Qinghai-Tibetan Plateau
[Ref.: #65019]	Country	China
[Ref.: #65019]	Country ISO 3 Code	CHN
[Ref.: #65019]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU535674 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	81
Soil Samples	62
Animal Samples	48
Plant Samples	164
Total Samples	355

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65019]	Sphingomonas montana strain W16RD 16S ribosomal RNA gene, partial sequence	KU535674	1394	GenBank ENA	1843236 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas montana W16RD	GCA_001956315	scaffold	GenBank ENA	1843236 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingomonas montana W16RD NCBI: GCA_001956315.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	82	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas montana W16RD NCBI: GCA_001956315.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	94.834	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.403	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.268	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.783	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.087	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	68.868	no

Availability in culture collections External links

[Ref.: #65019]

Culture collection no.

DSM 103337, CGMCC 1.15646

[Ref.: #111148]

SI-ID 403865

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas profundi sp. nov., isolated from deep-sea sediment of the Mariana Trench.	Yang S, Li X, Xiao X, Zhuang G, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004235	2020	*
Phylogeny	Sphingomonas montana sp. nov., isolated from a soil sample from the Tanggula Mountain in the Qinghai Tibetan Plateau.	Manandhar P, Zhang G, Lama A, Liu F, Hu Y	Antonie Van Leeuwenhoek	10.1007/s10482-017-0915-6	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65019

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103337

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68372

Automatically annotated from API 50CH assim .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111148

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403865.1 )

* These data were automatically processed and therefore are not curated

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