Pseudonocardia lutea (DSM 105123, CGMCC 4.7397, JCM 32387)

Name: Pseudonocardia lutea (DSM 105123, CGMCC 4.7397, JCM 32387)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158253

Type strain

Strain Designation NEAU-G57

Culture col. no. DSM 105123 CGMCC 4.7397 JCM 32387 NEAU-G57

NCBI tax ID(s) 2172015

Special Collections DSMZ JCM Literature strains

Links

Pseudonocardia lutea NEAU-G57 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from soil from the bottom of a river.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407439

JCM 32387,DSM 105123

@ref 20215

Last LPSN update 2025-12-16 10:07:59

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Pseudonocardia

Species Pseudonocardia lutea

Full scientific name Pseudonocardia lutea Gao et al. 2018

Morphology

Cell morphology

65399

Gram stainpositive

Multicellular morphology

@ref	Forms multicellular complex	Further description
65399		extensively branched substrate and aerial mycelia

Multimedia

@ref:	64906
multimedia content:	DSM_105123.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105123.jpg
caption:	Medium 554 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64906	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
64906	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
65399	ISP2
65399	ISP1
65399	ISP3
65399	ISP4
65399	ISP6
65399	ISP7
65399	ISP5
65399	Nutrient agar (NA)
65399	bennett's agar
65399	Czapek's agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64906	positive	growth	28	mesophilic
65399	positive	growth	10-45
65399	positive	optimum	28-37	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65399	positive	optimum	6-7
65399	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

65399

Oxygen toleranceaerobe

Spore formation

@ref	Spore description	Spore formation
65399	Chains of rod-shaped spores with smooth surfaces

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65399	NaCl	positive	growth	0-10 %(w/v)
65399	NaCl	positive	optimum	1-3 %(w/v)

Observation

@ref	Observation
65399	No diffusible pigment is produced.
65399	The cell wall belongs to type IV.
65399	Whole-cell sugars contain glucose, arabinose, xylose and galactose.
67770	quinones: MK-8(H₄), MK-8, MK-(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65399	62968 ChEBI	cellulose	+	hydrolysis
65399	16919 ChEBI	creatine	+	nitrogen source
65399	15824 ChEBI	D-fructose	+	carbon source
65399	12936 ChEBI	D-galactose	+	carbon source
65399	17634 ChEBI	D-glucose	-	carbon source
65399	16899 ChEBI	D-mannitol	-	carbon source
65399	16024 ChEBI	D-mannose	+	carbon source
65399	16988 ChEBI	D-ribose	+	carbon source
65399	17924 ChEBI	D-sorbitol	+	carbon source
65399	65327 ChEBI	D-xylose	+	carbon source
65399	4853 ChEBI	esculin	-	hydrolysis
65399	5291 ChEBI	gelatin	-	hydrolysis
65399	15428 ChEBI	glycine	+	nitrogen source
65399	16977 ChEBI	L-alanine	+	nitrogen source
65399	30849 ChEBI	L-arabinose	-	carbon source
65399	16467 ChEBI	L-arginine	+	nitrogen source
65399	17196 ChEBI	L-asparagine	+	nitrogen source
65399	29991 ChEBI	L-aspartate	+	nitrogen source
65399	29985 ChEBI	L-glutamate	+	nitrogen source
65399	18050 ChEBI	L-glutamine	+	nitrogen source
65399	17203 ChEBI	L-proline	+	nitrogen source
65399	62345 ChEBI	L-rhamnose	+	carbon source
65399	17115 ChEBI	L-serine	+	nitrogen source
65399	16857 ChEBI	L-threonine	-	nitrogen source
65399	17895 ChEBI	L-tyrosine	+	nitrogen source
65399	17716 ChEBI	lactose	+	carbon source
65399	17306 ChEBI	maltose	-	carbon source
65399		milk	-	assimilation
65399	17268 ChEBI	myo-inositol	+	carbon source
65399	17632 ChEBI	nitrate	-	reduction
65399	16634 ChEBI	raffinose	+	carbon source
65399	28017 ChEBI	starch	-	hydrolysis
65399	17992 ChEBI	sucrose	+	carbon source
65399	53424 ChEBI	tween 20	+	hydrolysis
65399	53423 ChEBI	tween 40	+	hydrolysis
65399	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65399	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
65399	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
64906	soil (silt) from the bottom of a river	Lac region (13° 38' N, 15° 22' E)	Chad	TCD	Africa	13.6333	15.3667 13.6333/15.3667
65399	soil sample collected from the bottom of a river	Chad						sodium succinate-asparagine agar medium	(0.2 g asparagine; 1 g sodium succinate; 0.2 g CaCl2 x 2H2O; 1 mg FeSO4 x 7H2O; 0.3 g KCl; 0.9 g KH2PO4; 0.6 g K2HPO4 x 3H2O; 20 g agar; 1 l distilled water; pH, 7.2) supplemented with cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1).	20 days	28	The soil sample (5 g) was suspended in distilled water (2 ml) followed by ultra sonic treatment (160 W) for 3 min. After the addition of distilled water (43 ml), the soil suspension was incubated at 28°C and 250 r.p.m. on a rotary shaker for 30 min. Subsequently, a 200 µl sample of the suspension was spread on a plate of sodium succinate-asparagine agar medium. 20 days of aerobic incubation at 28°C
67770	Soil from the bottom of a river,(13° 38' N, 15° 22' E)		Chad	TCD	Africa

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265805v1 assembly for Pseudonocardia lutea CGMCC 4.7397	scaffold	GCA_042658055	2172015	29.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64906	Pseudonocardia lutea strain NEAU-G57 16S ribosomal RNA gene, partial sequence	MF188864	1512		2172015

GC content

@ref	GC-content (mol%)	Method
64906	73.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudonocardia lutea sp. nov., a novel actinobacterium isolated from soil in Chad.	Gao Y, Piao C, Wang H, Shi L, Guo X, Song J, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.002780	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64906	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105123
#65399	Yuhang Gao, Chenyu Piao, Han Wang, Linlin Shi, Xiaowei Guo, Jia Song, Wensheng Xiang, Junwei Zhao, Xiangjing Wang: Pseudonocardia lutea sp. nov., a novel actinobacterium isolated from soil in Chad. IJSEM 2018: 1992 - 1997 68 ( DOI 10.1099/ijsem.0.002780 , PubMed 29683415 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudonocardia lutea (DSM 105123, CGMCC 4.7397, JCM 32387)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042658055

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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