Name: Roseomonas alkaliterrae DSM 25895
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158172

Type strain:

Species: Roseomonas alkaliterrae

Culture col. no.: DSM 25895, BCRC 80644, JCM 19656, YIM 78007

Strain history: W.-J. Li YIM 78007.

NCBI tax ID(s): 1452450 (species)

SI-ID 404193

DSM 25895

Section

Roseomonas alkaliterrae DSM 25895 is a mesophilic, Gram-negative bacterium that was isolated from alkaline geothermal soil from a hot spring.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas alkaliterrae**
	Full Scientific Name (LPSN)	Roseomonas alkaliterrae Dong et al. 2014

Synonym

Neoroseomonas alkaliterrae

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64765]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #64765]

Culture medium growth

[Ref.: #64765]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64765]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64765]			growth	37 °C
[Ref.: #67770]			growth	40 °C

[Ref.: #64765]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64765]	24286	+	-	-	-	-	-	+	-	-	-	-	-	-	-	+/-	-	+	+	+	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64765]	Sample type/isolated from	alkaline geothermal soil from a hot spring
[Ref.: #64765]	Geographic location (country and/or sea, region)	Yunnan Province, Tengchong county, Hehua hot spring
[Ref.: #64765]	Country	China
[Ref.: #64765]	Country ISO 3 Code	CHN
[Ref.: #64765]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Alkaline geothermal soil sample from Hehua hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tengchong, Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Aquatic	#Thermal spring
#Condition	#Alkaline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64765]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64765]	Roseomonas alkaliterrae strain YIM 78007 16S ribosomal RNA gene, partial sequence	KF771274	1490	ENA	1452450 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neoroseomonas alkaliterrae DSM 25895	GCA_014199195	scaffold	GenBank	1452450 tax ID	*
[Ref.: #66792]	Roseomonas alkaliterrae strain DSM 25895	1452450.3	wgs	PATRIC	1452450 tax ID	*
[Ref.: #66792]	Roseomonas alkaliterrae DSM 25895	2828369385	draft	JGI IMG/M	1452450 tax ID	*

[Ref.: #64765]

GC-content

63 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Roseomonas alkaliterrae DSM 25895 NCBI: GCA_014199195.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Roseomonas alkaliterrae DSM 25895 NCBI: GCA_014199195.1
[Ref.: #69480]	flagellated	no	77.589	no
[Ref.: #69480]	gram-positive	no	98.699	no
[Ref.: #69480]	anaerobic	no	96.762	no
[Ref.: #69480]	aerobic	yes	86.172	no
[Ref.: #69480]	halophile	no	75.473	no
[Ref.: #69480]	spore-forming	no	97.139	no
[Ref.: #69480]	glucose-util	yes	56.295	yes
[Ref.: #69480]	thermophile	no	57.603	no
[Ref.: #69480]	motile	yes	64.501	no
[Ref.: #69480]	glucose-ferment	no	89.765	yes

Availability in culture collections External links

[Ref.: #64765]

Culture collection no.

DSM 25895, BCRC 80644, JCM 19656, YIM 78007

[Ref.: #111003]

SI-ID 404193

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas rubea sp. nov., isolated from rice paddy soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.005251	2022	*
Phylogeny	Roseomonas alkaliterrae sp. nov., isolated from an alkali geothermal soil sample in Tengchong, Yunnan, South-West China.	Dong L, Ming H, Yin YR, Duan YY, Zhou EM, Nie GX, Feng HG, Liu L, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-014-0144-1	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64765

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25895

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111003

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404193.1 )

* These data were automatically processed and therefore are not curated

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