Name: Staphylococcus edaphicus P5085
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157258

Type strain:

Species: Staphylococcus edaphicus

Strain Designation: P5085

Culture col. no.: DSM 104441, CCM 8730, CCUG 72269

Strain history: <- I. Sedlacek; Masaryk University, Brno, CZECH REPUBLIC; P5085<-I. Sedlácek; CCM, Masaryk University, Czech Republic

NCBI tax ID(s): 1869227 (species)

Section

Staphylococcus edaphicus P5085 is an aerobe, mesophilic bacterium that was isolated from Fragments of black porus stone.

aerobe
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	15-12-2021 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Caryophanales
	Family	Staphylococcaceae
	Genus	Staphylococcus
	Species	Staphylococcus edaphicus
	Full Scientific Name (PNU)	Staphylococcus edaphicus Pant??ek et al. 2018

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64323]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64323]

Culture medium growth

[Ref.: #64323]

Culture medium link

Medium recipe at BacMedia

[Ref.: #64323]

Culture medium composition

expand / minimize

[Ref.: #64323]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #64323]

Culture medium growth

[Ref.: #64323]

Culture medium link

Medium recipe at BacMedia

[Ref.: #64323]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #63798]			growth	37 °C
[Ref.: #64323]			growth	37 °C

[Ref.: #63798]	Temperature range	mesophilic
[Ref.: #64323]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63798]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	trehalose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic resistance	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite
[Ref.: #68375]		acetoin ChEBI	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68375]	alkaline phosphatase	-	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	+	3.2.1.31	* from API ID32STA
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #64323]	4474	+	-	-	-	+	+	+/-	+	-	-	+	-	-	-	+	-	-	-	-	-	+	+	+	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63798]	Sample type/isolated from	Fragments of black porus stone
[Ref.: #63798]	Sampling date	2016
[Ref.: #63798]	Geographic location (country and/or sea, region)	Ross Island,Lachman Cape
[Ref.: #63798]	Country	Antarctica
[Ref.: #63798]	Country ISO 3 Code	ATA
[Ref.: #63798]	Continent	Australia and Oceania

[Ref.: #64323]	Sample type/isolated from	fragments of black porous stone (top of the hill)
[Ref.: #64323]	Geographic location (country and/or sea, region)	James Ross Island (57° 47' 11" W, 63° 46' 58" S)
[Ref.: #64323]	Country	Antarctica
[Ref.: #64323]	Country ISO 3 Code	ATA
[Ref.: #64323]	Continent	Australia and Oceania

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus edaphicus CCM 8730	GCA_002614725	contig	GenBank	1955013 tax ID	*
[Ref.: #66792]	Staphylococcus edaphicus strain CCM 8730 strain CCM 5085	1955013.3	wgs	PATRIC	1955013 tax ID	*
[Ref.: #66792]	Staphylococcus edaphicus CCM 8730	2802429263	draft	JGI IMG/M	1955013 tax ID	*

Availability in culture collections External links

[Ref.: #64323]

Culture collection no.

DSM 104441, CCM 8730, CCUG 72269

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#63798 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 72269

#64323

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104441

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

* These data were automatically processed and therefore are not curated

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