Vagococcus vulneris (CCUG 70832, LMG 30165, SS1995)

Name: Vagococcus vulneris (CCUG 70832, LMG 30165, SS1995)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157226

Type strain

Strain Designation SS1995

Culture col. no. CCUG 70832 LMG 30165 SS1995

NCBI tax ID(s) 1977869

Special Collections CCUG Literature strains

Links

Vagococcus vulneris SS1995 is a microaerophile, mesophilic, Gram-positive prokaryote that forms circular colonies and was isolated from Human wound,foot.

Gram-positive rod-shaped colony-forming microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 410214

LMG 30165,CCUG 70832

@ref 20215

Last LPSN update 2025-12-16 10:07:44

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Enterococcaceae

Genus Vagococcus

Species Vagococcus vulneris

Full scientific name Vagococcus vulneris Shewmaker et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67899	positive	rod-shaped
67899		coccus-shaped
125438	positive		90.857

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony size	Colony color	Colony shape	Incubation period	Medium used
67899	alpha	1	1 mm	grey-white	circular	1 days	trypticase soy agar supplemented with 5 % sheep blood

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
63754	positive	growth	37	mesophilic
67899	positive	growth	10	psychrophilic
67899	negative	growth	45
67899	positive	growth	35	mesophilic

Physiology and metabolism

Oxygen tolerance

63754

Oxygen tolerancemicroaerophile

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67899	NaCl	positive	growth	6.5 %

Observation

@ref	Observation
67899	Acetoin is detected in the rapid ID 32 STREP method, but not in the traditional tube method.
67899	Acid is weakly produced from pullulan with the traditional 7 day tube method, but not with the rapid ID 32 STREP system.
67899	No gas is produced in Mann-Rogosa-Sharp broth.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67899	29016 ChEBI	arginine	-	hydrolysis
67899	3098 ChEBI	bile acid	+	growth
67899	17108 ChEBI	D-arabinose	-	builds acid from
67899	16899 ChEBI	D-mannitol	-	builds acid from
67899	16988 ChEBI	D-ribose	+	builds acid from
67899	17924 ChEBI	D-sorbitol	-	builds acid from
67899	16443 ChEBI	D-tagatose	-	builds acid from
67899	65327 ChEBI	D-xylose	-	builds acid from
67899	4853 ChEBI	esculin	+	hydrolysis
67899	17754 ChEBI	glycerol	+	builds acid from
67899	606565 ChEBI	hippurate	-	hydrolysis
67899	15443 ChEBI	inulin	-	builds acid from
67899	30849 ChEBI	L-arabinose	-	builds acid from
67899	17266 ChEBI	L-sorbose	-	builds acid from
67899	65328 ChEBI	L-xylose	-	builds acid from
67899	17716 ChEBI	lactose	-	builds acid from
67899	17306 ChEBI	maltose	+	builds acid from
67899	28053 ChEBI	melibiose	+	builds acid from
67899	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
67899	15361 ChEBI	pyruvate	-	growth
67899	16634 ChEBI	raffinose	+	builds acid from
67899	28017 ChEBI	starch	-	hydrolysis
67899	17992 ChEBI	sucrose	+	builds acid from
67899	30477 ChEBI	tellurite	-	growth
67899	27082 ChEBI	trehalose	+	builds acid from
67899	16199 ChEBI	urea	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
67899	catalase	-	1.11.1.6
67899	leucine aminopeptidase	+	3.4.1.1
67899	pyrrolidonyl arylamidase	+	3.4.19.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Limb	#Foot
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
63754	Human wound,foot	2012	Hawaii	USA	USA	North America
67899	man?s foot wound

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67899	Vagococcus vulneris SS1995T assembly for Vagococcus vulneris SS1995	contig	GCA_003950515	1977869.3	2884232757	1977869	67.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67899	Vagococcus vulneris strain SS1995 16S ribosomal RNA gene, partial sequence	KY937951	1480		1977869

GC content

@ref	GC-content (mol%)	Method
67899	34.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vagococcus vulneris SS1995
NCBI: GCA_003950515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.86	yes
125438	anaerobic	anaerobicⓘ	no	88.60	no
125438	aerobic	aerobicⓘ	no	95.86	yes
125438	spore-forming	spore-formingⓘ	no	78.89	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	85.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vagococcus bubulae sp. nov., isolated from ground beef, and Vagococcus vulneris sp. nov., isolated from a human foot wound.	Shewmaker PL, Whitney AM, Gulvik CA, Humrighouse BW, Gartin J, Moura H, Barr JR, Moore ERB, Karlsson R, Pinto TCA, Teixeira LM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003459	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#63754	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70832
#67899	Patricia L. Shewmaker, Anne M. Whitney, Christopher A. Gulvik, Ben W. Humrighouse, Jarrett Gartin, Hercules Moura, John R. Barr, Edward R. B. Moore, Roger Karlsson, Tatiana C. A. Pinto, Lucia M. Teixeira: Vagococcus bubulae sp. nov., isolated from ground beef, and Vagococcus vulneris sp. nov., isolated from a human foot wound. IJSEM 69: 2268 - 2276 2019 ( DOI 10.1099/ijsem.0.003459 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vagococcus vulneris (CCUG 70832, LMG 30165, SS1995)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003950515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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