Name: Elizabethkingia occulta CL681/77
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157094

Type strain:

Species: Elizabethkingia occulta

Strain Designation: CL681/77, G4070

Culture col. no.: CCUG 69505, DSM 2976, CIP 111193, DSM 103650

Strain history: CIP <- 2016, CCUG <- 2016, A. Nicholson, CDC, Atlanta, Georgia, USA: strain G4070

NCBI tax ID(s): 1867263 (species)

SI-ID 402440

DSM 103650, CCUG 69505, CIP 111193

Other strains from Elizabethkingia occulta

E. occulta CCUG 69497

Section

Elizabethkingia occulta CL681/77 is an aerobe, mesophilic bacterium that was isolated from Human sputum.

aerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Elizabethkingia*
	Species	**Elizabethkingia occulta**
	Full Scientific Name (LPSN)	Elizabethkingia occulta Nicholson et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #121379]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69050]

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

[Ref.: #69050]

Culture medium growth

[Ref.: #69050]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121379]

Culture medium

CIP Medium 72

[Ref.: #121379]

Culture medium growth

[Ref.: #121379]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #63597]			growth	30 °C
[Ref.: #69050]			growth	28 °C

[Ref.: #63597]	Temperature range	mesophilic
[Ref.: #69050]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63597]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63597]	Sample type/isolated from	Human sputum
[Ref.: #63597]	Sampling date	1977
[Ref.: #63597]	Geographic location (country and/or sea, region)	Melbourne
[Ref.: #63597]	Country	Australia
[Ref.: #63597]	Country ISO 3 Code	AUS
[Ref.: #63597]	Continent	Australia and Oceania

[Ref.: #121379]	Sample type/isolated from	Human, Sputum
[Ref.: #121379]	Geographic location (country and/or sea, region)	Melbourne
[Ref.: #121379]	Country	Australia
[Ref.: #121379]	Country ISO 3 Code	AUS
[Ref.: #121379]	Continent	Australia and Oceania
[Ref.: #121379]	Isolation date	1977
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Sputum

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #121379]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Elizabethkingia occulta G4070	GCA_002023715	contig	GenBank	1867263 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Elizabethkingia occulta G4070 NCBI: GCA_002023715.1
[Ref.: #69480]	flagellated	no	95.811	no
[Ref.: #69480]	gram-positive	no	97.405	no
[Ref.: #69480]	anaerobic	no	99.726	yes
[Ref.: #69480]	aerobic	yes	90.013	yes
[Ref.: #69480]	halophile	no	94.394	no
[Ref.: #69480]	spore-forming	no	94.411	no
[Ref.: #69480]	glucose-util	yes	86.851	no
[Ref.: #69480]	thermophile	no	99.47	yes
[Ref.: #69480]	motile	no	90.591	no
[Ref.: #69480]	glucose-ferment	no	91.234	no

Availability in culture collections External links

[Ref.: #63597]

Culture collection no.

CCUG 69505, DSM 2976, CIP 111193, DSM 103650

[Ref.: #110222]

SI-ID 402440

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.	Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR	Antonie Van Leeuwenhoek	10.1007/s10482-017-0926-3	2017	*
Phylogeny	Elizabethkingia argenteiflava sp. nov., isolated from the pod of soybean, Glycine max.	Hwang JH, Kim J, Kim JH, Mo S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004767	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63597 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69505

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69050

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103650

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110222

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402440.1 )

#121379 Collection of Institut Pasteur ; Curators of the CIP; CIP 111193
* These data were automatically processed and therefore are not curated

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Elizabethkingia occulta G4070

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