Name: Paraglaciecola oceanifecundans 162Z-12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 156652

Type strain:

Species: Paraglaciecola oceanifecundans

Strain Designation: 162Z-12

Culture col. no.: CCUG 63891, LMG 27453, KCTC 32337

Strain history: <- S Shivaji, CCMB, India

NCBI tax ID(s): 1211136 (species)

SI-ID 411222

CCUG 63891

Section

Paraglaciecola oceanifecundans 162Z-12 is an aerobe, mesophilic, motile bacterium that was isolated from From water sample.

motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Paraglaciecola*
	Species	**Paraglaciecola oceanifecundans**
	Full Scientific Name (LPSN)	Paraglaciecola oceanifecundans Shivaji and Reddy 2014

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.424

[Ref.: #63043]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #63043]			growth	30 °C
[Ref.: #67771]			growth	22 °C

[Ref.: #63043]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63043]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67771]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From water sample
[Ref.: #67771]	Geographic location (country and/or sea, region)	Southern Waters, the Antarctic
[Ref.: #67771]	Country	Antarctica
[Ref.: #67771]	Country ISO 3 Code	ATA
[Ref.: #67771]	Continent	Australia and Oceania

[Ref.: #63043]	Sample type/isolated from	Water
[Ref.: #63043]	Sampling date	2009
[Ref.: #63043]	Geographic location (country and/or sea, region)	Southern Waters
[Ref.: #63043]	Country	Antarctica
[Ref.: #63043]	Country ISO 3 Code	ATA
[Ref.: #63043]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX310203 (>99% sequence identity) for Paraglaciecola from Microbeatlas

Aquatic Samples	9023
Soil Samples	234
Animal Samples	6581
Plant Samples	54
Total Samples	15892

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Paraglaciecola oceanifecundans strain 162Z-12 16S ribosomal RNA gene, partial sequence	JX310203	1530	ENA	1211136 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paraglaciecola oceanifecundans KCTC 32337	GCA_014652595	scaffold	GenBank	1211136 tax ID	*
[Ref.: #66792]	Paraglaciecola oceanifecundans strain KCTC 32337	1211136.3	wgs	PATRIC	1211136 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paraglaciecola oceanifecundans KCTC 32337 NCBI: GCA_014652595.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paraglaciecola oceanifecundans KCTC 32337 NCBI: GCA_014652595.1
[Ref.: #69480]	motile	yes	91.644	yes
[Ref.: #69480]	flagellated	yes	83.718	no
[Ref.: #69480]	gram-positive	no	98.842	yes
[Ref.: #69480]	anaerobic	no	98.341	no
[Ref.: #69480]	aerobic	yes	86.987	no
[Ref.: #69480]	halophile	yes	69.562	no
[Ref.: #69480]	spore-forming	no	96.679	no
[Ref.: #69480]	glucose-util	yes	93.191	no
[Ref.: #69480]	thermophile	no	99.729	yes
[Ref.: #69480]	glucose-ferment	no	79.941	no

Availability in culture collections External links

[Ref.: #63043]

Culture collection no.

CCUG 63891, LMG 27453, KCTC 32337

[Ref.: #109858]

SI-ID 411222

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic analyses of the genus Glaciecola: emended description of the genus Glaciecola, transfer of Glaciecola mesophila, G. agarilytica, G. aquimarina, G. arctica, G. chathamensis, G. polaris and G. psychrophila to the genus Paraglaciecola gen. nov. as Paraglaciecola mesophila comb. nov., P. agarilytica comb. nov., P. aquimarina comb. nov., P. arctica comb. nov., P. chathamensis comb. nov., P. polaris comb. nov. and P. psychrophila comb. nov., and description of Paraglaciecola oceanifecundans sp. nov., isolated from the Southern Ocean.	Shivaji S, Reddy GS	Int J Syst Evol Microbiol	10.1099/ijs.0.065409-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63043 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63891

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#109858

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411222.1 )

* These data were automatically processed and therefore are not curated

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Paraglaciecola oceanifecundans KCTC 32337

Paraglaciecola oceanifecundans KCTC 32337

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