Flavobacterium branchiicola (CCUG 60096, CECT 7790)

Name: Flavobacterium branchiicola (CCUG 60096, CECT 7790)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156013

Type strain

Culture col. no. CCUG 60096 CECT 7790

NCBI tax ID(s) 1114875

Special Collections CCUG

Links

Flavobacterium branchiicola CCUG 60096 is an aerobe bacterium that was isolated from Trout gills.

aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 394981

CECT 7790,CCUG 60096T

@ref 20215

Last LPSN update 2026-05-29 08:43:24

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium branchiicola

Full scientific name Flavobacterium branchiicola Zamora et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	96.551

Colony morphology

62197

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
62197	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62197	aerobe
125439	obligate aerobe	99.123

Spore formation

@ref	Spore formation	Confidence
125439		99.784

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes
#Host Body-Site	#Oral cavity and airways

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62197	Trout gills	2009-02-15	Madrid	Spain	ESP	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265270v1 assembly for Flavobacterium branchiicola CCUG 60096	scaffold	GCA_042652705	1114875	70.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265270v1 assembly for Flavobacterium branchiicola CCUG 60096
NCBI: GCA_042652705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.12	no
125439	gram_stain	BacteriaNetⓘ	negative	96.55	no
125439	motility	BacteriaNetⓘ	no	68.12	no
125439	spore_formation	BacteriaNetⓘ	no	99.78	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62197	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60096
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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