Corynebacterium genitalium (CCUG 59401, DSM 113345)

Name: Corynebacterium genitalium (CCUG 59401, DSM 113345)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155823

Type strain

Culture col. no. CCUG 59401 DSM 113345

NCBI tax ID(s) 38288

Special Collections CCUG

Links

Corynebacterium genitalium CCUG 59401 is a microaerophile, mesophilic prokaryote that was isolated from Environment,industry .

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397819

DSM 113345,CCUG 59401

@ref 20215

Last LPSN update 2025-12-16 10:07:24

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium genitalium

Full scientific name Corynebacterium genitalium (ex Furness and Evangelista 1976) Jaén-Luchoro et al. 2023

Synonyms (1)

"Corynebacterium genitalium"

BacDive ID	Other strains from **Corynebacterium genitalium** (10)	Type strain
150099	C. genitalium Furness 392-1, CCUG 38989 B, ATCC 33030, ... (type strain)
134587	C. genitalium 418H, CIP 106715, CECT 760, CCUG 28786, ATCC ...
144187	C. genitalium CCUG 23389
145535	C. genitalium CCUG 28784, ATCC 33034
151984	C. genitalium CCUG 45430
156819	C. genitalium CCUG 65575
174697	C. genitalium DSM 113348, CCUG 65737
174698	C. genitalium DSM 113351, CCUG 71335
174699	C. genitalium DSM 113349, CCUG 69979
174700	C. genitalium DSM 113350, CCUG 70398

Morphology

Cell morphology

@ref	Motility	Confidence
125438		94

Colony morphology

61947

Incubation period>3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
124434	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
61947	positive	growth	37	mesophilic
124434	positive	growth	37

Physiology and metabolism

Oxygen tolerance

61947

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
61947	-	+	+	+	-	+/-	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
61947	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Industrial

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
61947	Environment,industry (wall 29b)	2010-02-15	Sweden	SWE	Europe
124434	Environment, industry (wall 29b)		Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2445403v1 assembly for Corynebacterium pseudogenitalium CCUG 59401	contig	GCA_024454035	38303.40	38303	47.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Corynebacterium genitalium strain CCUG 59401 16S ribosomal RNA gene, partial sequence.	HM205109	1513		38288

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium pseudogenitalium CCUG 59401
NCBI: GCA_024454035.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.59	no
125438	anaerobic	anaerobicⓘ	no	94.68	no
125438	aerobic	aerobicⓘ	no	52.95	yes
125438	spore-forming	spore-formingⓘ	no	78.62	no
125438	thermophilic	thermophileⓘ	no	94.08	no
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61947	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59401
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#124434	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 113345
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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