Mediterraneibacter gnavus (CCUG 57161)

Name: Mediterraneibacter gnavus (CCUG 57161)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155272

Type strain

Culture col. no. CCUG 57161

NCBI tax ID(s) 33038

Special Collections CCUG

Links

Mediterraneibacter gnavus CCUG 57161 is an anaerobe, mesophilic prokaryote that was isolated from Human tissue,82-yr-old woman,femur.

anaerobe mesophilic genome sequence

Name and taxonomic classification

SI-ID 412102

CCUG 57161

@ref 20215

Last LPSN update 2025-12-16 10:07:16

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Lachnospiraceae

Genus Mediterraneibacter

Species Mediterraneibacter gnavus

Full scientific name Mediterraneibacter gnavus (Moore et al. 1976) Togo et al. 2023

Synonyms (1)

Ruminococcus gnavus

BacDive ID	Other strains from **Mediterraneibacter gnavus** (38)	Type strain
165414	M. gnavus CPI C7-9, JCM 6515, ATCC 29149, VPI C7-9, ... (type strain)
158092	M. gnavus H2_28, DSM 108212
175215	M. gnavus HUN022, AGR2154, DSM 115842
176873	M. gnavus QRD001, DSM 119778
176874	M. gnavus QRD002, DSM 119779
176875	M. gnavus QRD003, DSM 119780
176876	M. gnavus QRD004, DSM 119781
176877	M. gnavus QRD019, DSM 119782
176878	M. gnavus QRD020, DSM 119783
176879	M. gnavus QRD021, DSM 119791
176880	M. gnavus QRD022, DSM 119792
176881	M. gnavus QRD023, DSM 119793
176882	M. gnavus QRD024, DSM 119794
176883	M. gnavus QRD025, DSM 119795
176884	M. gnavus QRD026, DSM 119796
176885	M. gnavus QRD027, DSM 119800
176886	M. gnavus QRD028, DSM 119801
176887	M. gnavus QRD029, DSM 119802
176888	M. gnavus QRD030, DSM 119818
176889	M. gnavus QRD031, DSM 119819
176890	M. gnavus QRD032, DSM 119820
176891	M. gnavus QRD033, DSM 119821
176892	M. gnavus QRD034, DSM 119822
176893	M. gnavus QRD035, DSM 119823
176894	M. gnavus QRD036, DSM 119852
176895	M. gnavus QRD037, DSM 119853
176896	M. gnavus QRD038, DSM 119854
176897	M. gnavus QRD039, DSM 119855
176898	M. gnavus QRD040, DSM 119856
176899	M. gnavus QRD041, DSM 119857
176900	M. gnavus QRD042, DSM 119873
176901	M. gnavus QRD043, DSM 119874
176902	M. gnavus QRD044, DSM 119875
176903	M. gnavus QRD045, DSM 119876
176904	M. gnavus QRD046, DSM 119877
176905	M. gnavus QRD047, DSM 119878
176906	M. gnavus CLA-AP-H37, DSM 120239
176907	M. gnavus CLA-JM-H50, DSM 120343

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
61218	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61218	anaerobe
125438	anaerobe	91.473
125439	anaerobe	99.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	+	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	+	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	+	3.2.1.51	from API rID32A
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68380	alpha-galactosidase	+	3.2.1.22	from API rID32A
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68382	beta-galactosidase	+	3.2.1.23	from API zym
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	+	3.2.1.21	from API zym
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

61218

Fatty acid	Percentage	ECL
C16:0	30.4	16
C14:0	10.8	14
C17:1 ISO I/C16:0 DMA	7	16.481
C18:1 ω7c DMA	6.5	18.282
C16:1 ω7c DMA	5.3	16.288
C18:1 ω7c /12t/9t	4.1	17.824
C18:0	3.7	18
C12:0	3.6	12
C16:1 ω7c	3.4	15.819
C18:2 ω6,9c/C18:0 ANTE	3.2	17.724
C17:0 iso 3OH	3	18.161
C13:0 3OH/C15:1 i I/H	2.8	14.469
C18:1 ω9c DMA	2.5	18.226
C19:1 ISO I	2.3	18.473
C17:1 ω8c	2.2	16.792
C18:1 ω9c	1.8	17.769
unknown 14.776	1.7	14.776
C16:0 aldehyde	1.7	14.949
C13:0 ISO 2OH	1.1	13.814
C13:1 at 12-13	1	12.931
Unidentified	0.9	12.466
C17:0 anteiso	0.8	16.722

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
61218	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	+	-	-	-

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
61218	-	-	+	+	-	+	+	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Female
#Host Body-Site	#Other	#Bone
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
61218	Human tissue,82-yr-old woman,femur	2008-10-01	Uddevalla	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2680498v1 assembly for Mediterraneibacter gnavus CCUG 57161	contig	GCA_026804985	33038.1043	33038	64.61

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: [Ruminococcus] gnavus CCUG 57161
NCBI: GCA_026804985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.00	no
125439	motility	BacteriaNetⓘ	yes	83.10	no
125439	gram_stain	BacteriaNetⓘ	variable	77.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: [Ruminococcus] gnavus CCUG 57161
NCBI: GCA_026804985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	84.90	no
125438	anaerobic	anaerobicⓘ	yes	91.47	yes
125438	aerobic	aerobicⓘ	no	97.34	no
125438	spore-forming	spore-formingⓘ	no	52.61	no
125438	thermophilic	thermophileⓘ	no	98.24	no
125438	flagellated	motile2+ⓘ	no	83.49	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61218	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57161
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mediterraneibacter gnavus (CCUG 57161)

Name and taxonomic classification

Morphology