Name: Salirhabdus euzebyi CVS-14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1546

Type strain:

Species: Salirhabdus euzebyi

Strain Designation: CVS-14

Culture col. no.: DSM 19612, CIP 108577, LMG 22839

Strain history: CIP <- 2004, M.S. Da Costa, Coimbra Univ., Coimbra, Portugal: strain CVS-14

NCBI tax ID(s): 394506 (species)

SI-ID 133761

LMG 22839, CIP 108577, DSM 19612

Special Collections

Section

Salirhabdus euzebyi CVS-14 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from sea salt evaporation pond.

Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Salirhabdus*
	Species	**Salirhabdus euzebyi**
	Full Scientific Name (LPSN)	Salirhabdus euzebyi Albuquerque et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32121]	Gram stain	positive

[Ref.: #32121]	Cell length	5.75 µm

[Ref.: #32121]	Cell width	0.35 µm

[Ref.: #32121]	Cell shape	rod-shaped
[Ref.: #119147]	Cell shape	rod-shaped

[Ref.: #32121]	Motility	yes
[Ref.: #119147]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8208]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8208]

Culture medium growth

[Ref.: #8208]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8208]

Culture medium composition

expand / minimize

[Ref.: #37441]

Culture medium

Marine agar (MA)

[Ref.: #37441]

Culture medium growth

[Ref.: #37441]

Culture medium composition

expand / minimize

[Ref.: #119147]

Culture medium

CIP Medium 13

[Ref.: #119147]

Culture medium growth

[Ref.: #119147]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8208]		growth	37 °C
[Ref.: #32121]		growth	15-50 °C
[Ref.: #32121]		optimum	37.5 °C
[Ref.: #37441]		growth	37 °C
[Ref.: #119147]		growth	25-45 °C
[Ref.: #119147]	no	growth	10 °C
[Ref.: #119147]	no	growth	15 °C

	pH	Kind of pH		pH
[Ref.: #32121]			optimum	7.8
[Ref.: #32121]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32121]	Oxygen tolerance	aerobe
[Ref.: #119147]	Oxygen tolerance	obligate aerobe

[Ref.: #32121]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.646
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #32121]	NaCl		growth	0.0-16	%
[Ref.: #32121]	NaCl		optimum	5	%
[Ref.: #119147]	NaCl		growth	2	%
[Ref.: #119147]	NaCl	no	growth	0	%
[Ref.: #119147]	NaCl	no	growth	4	%
[Ref.: #119147]	NaCl	no	growth	6	%
[Ref.: #119147]	NaCl	no	growth	8	%
[Ref.: #119147]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	arabinose ChEBI	+	carbon source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	arginine ChEBI	+	carbon source
[Ref.: #32121]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119147]	citrate ChEBI	-	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119147]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	histidine ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	lactate ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	malate ChEBI	+	carbon source
[Ref.: #32121]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	mannitol ChEBI	+	carbon source
[Ref.: #32121]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	myo-inositol ChEBI	+	carbon source
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	nitrate ChEBI	+	reduction
[Ref.: #119147]	nitrate ChEBI	+	reduction
[Ref.: #119147]	nitrite ChEBI	+	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #32121]	proline ChEBI	+	carbon source
[Ref.: #32121]	pyruvate ChEBI	+	carbon source
[Ref.: #32121]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	rhamnose ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	serine ChEBI	+	carbon source
[Ref.: #32121]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	succinate ChEBI	+	carbon source
[Ref.: #32121]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	tween 20 ChEBI	+	carbon source
[Ref.: #32121]	tween 60 ChEBI	+	carbon source
[Ref.: #32121]	tween 80 ChEBI	+	carbon source
[Ref.: #32121]	xylitol ChEBI	+	carbon source
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #32121]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119147]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #119147]		acetoin ChEBI	-
[Ref.: #119147]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119147]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #32121]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119147]	amylase	-
[Ref.: #119147]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32121]	catalase	+	1.11.1.6
[Ref.: #119147]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32121]	cytochrome oxidase	+	1.9.3.1
[Ref.: #119147]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119147]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #32121]	gelatinase	+
[Ref.: #119147]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119147]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119147]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119147]	oxidase	+
[Ref.: #119147]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119147]	tryptophan deaminase	-
[Ref.: #119147]	tween esterase	-
[Ref.: #119147]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119147]	11328	not determinedn.d.	+	-	-	-	+/-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119147]	11298	-	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8208]	Sample type/isolated from	sea salt evaporation pond
[Ref.: #8208]	Geographic location (country and/or sea, region)	Liha do Sal, Cape Verde
[Ref.: #8208]	Country	Portugal
[Ref.: #8208]	Country ISO 3 Code	PRT
[Ref.: #8208]	Continent	Europe

[Ref.: #119147]	Sample type/isolated from	Environment, Soil sample
[Ref.: #119147]	Geographic location (country and/or sea, region)	Llha do Sal
[Ref.: #119147]	Country	Cape Verde
[Ref.: #119147]	Country ISO 3 Code	CPV
[Ref.: #119147]	Continent	Africa
[Ref.: #119147]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Pond (small)
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM292417 (>99% sequence identity) for Salirhabdus euzebyi subclade from Microbeatlas

Aquatic Samples	65
Soil Samples	111
Animal Samples	128
Plant Samples	19
Total Samples	323

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8208]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119147]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8208]	Salirhabdus euzebyi 16S rRNA gene, type strain CVS-14T	AM292417	1546	GenBank ENA	394506 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salirhabdus euzebyi DSM 19612	GCA_014207435	scaffold	GenBank ENA	394506 tax ID	*
[Ref.: #66792]	Salirhabdus euzebyi strain DSM 19612	394506.4	wgs	PATRIC	394506 tax ID	*
[Ref.: #66792]	Salirhabdus euzebyi DSM 19612	2861401915	draft	JGI IMG/M	394506 tax ID	*

[Ref.: #8208]

GC-content

37 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salirhabdus euzebyi strain DSM 19612 PATRIC: 394506.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salirhabdus euzebyi DSM 19612 NCBI: GCA_014207435.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	76.137	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.608	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.378	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.646	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.616	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.093	no

Availability in culture collections External links

[Ref.: #8208]

Culture collection no.

DSM 19612, CIP 108577, LMG 22839

[Ref.: #71191]

SI-ID 133761

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salirhabdus euzebyi gen. nov., sp. nov., a Gram-positive, halotolerant bacterium isolated from a sea salt evaporation pond.	Albuquerque L, Tiago I, Rainey FA, Taborda M, Nobre MF, Verissimo A, da Costa MS	Int J Syst Evol Microbiol	10.1099/ijs.0.64999-0	2007	*

References

#8208

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19612

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32121

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28366 (see below)

#37441 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#71191

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID133761.1 )

#119147 Collection of Institut Pasteur ; Curators of the CIP; CIP 108577

#28366

IJSEM 1566 2007 ( DOI 10.1099/ijs.0.64999-0 , PubMed 17625195 )

* These data were automatically processed and therefore are not curated

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Salirhabdus euzebyi strain DSM 19612

Salirhabdus euzebyi DSM 19612

Change proposal

Change proposal