Streptomyces gelaticus (DSM 40065, AS 4.1444, ATCC 23912)

Name: Streptomyces gelaticus (DSM 40065, AS 4.1444, ATCC 23912)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15217

Type strain

Culture col. no. DSM 40065 AS 4.1444 ATCC 23912 ATCC 3323 CBS 131.20 21 more

NCBI tax ID(s) 285446

Special Collections DSMZ JCM Wink compendium

History <- E.B. Shirling, ISP <- S.A. Waksman, IMRU KCC S-0376 <-- IFO 12866 <-- SAJ <-- ISP 5065 <-- IMRU 3323.

Links

Streptomyces gelaticus DSM 40065 is a bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 177113

LMG 19376,ATCC 23912,ATCC 3323,CCRC 11477,DSM 40065,IFO 12866,IMET 40285,JCM 4376,NCIMB 9848,NRRL B-1252,CCM 3177,VKM Ac-1704,CBS 833.68,CBS 369.39,CBS 131.20,NBRC 12866,AS 4.1444,BCRC 11477,CGMCC 4.1444

@ref 20215

Last LPSN update 2026-02-09 11:21:38

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces gelaticus

Full scientific name Streptomyces gelaticus (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

Synonyms (1)

"Actinomyces gelaticus"

BacDive ID	Other strains from **Streptomyces gelaticus** (1)	Type strain
15218	S. gelaticus C2828-PD-04942, DSM 41144, IMRU 3733, NRRL ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.7
125439		90.4
125438	positive	90.425

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9266	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9266	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9266	positive	growth	28
18477	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.257
125439	obligate aerobe	98.9

Compound production

@ref	Compound
9266	elaiomycin
20216	Elaiomycin

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18477	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
18477	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18477	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18477	29864 ChEBI	mannitol	-
18477	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18477	16634 ChEBI	raffinose	+
18477	26546 ChEBI	rhamnose	-
18477	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18477	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18477	+	+	-	-	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9266

Sample typesoil

Taxonmaps

69479

Global distribution of 16S sequence DQ026636 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	125
Soil Samples	1589
Animal Samples	280
Plant Samples	537
Total Samples	2531

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9266	1	Risk group (German classification) According to TRBA 466
18477	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464953v1 assembly for Streptomyces gelaticus JCM 4376	scaffold	GCA_014649535	285446.3	8109845906	285446	48.65

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces gelaticus gene for 16S rRNA, partial sequence, strain: NBRC 12866	AB184202	1466	285446
20218	Streptomyces gelaticus strain NRRL B-2928 16S ribosomal RNA gene, partial sequence	DQ026636	1483	285446
124043	Streptomyces gelaticus strain JCM 4376 16S ribosomal RNA gene, partial sequence.	MT760525	1330	285446

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces gelaticus JCM 4376
NCBI: GCA_014649535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	89.70	no
125439	motility	BacteriaNetⓘ	no	90.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces gelaticus JCM 4376
NCBI: GCA_014649535.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.43	no
125438	anaerobic	anaerobicⓘ	no	97.41	no
125438	aerobic	aerobicⓘ	yes	91.26	no
125438	spore-forming	spore-formingⓘ	yes	87.10	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Natural Products from Actinobacteria Associated with Fungus-Growing Termites.	Benndorf R, Guo H, Sommerwerk E, Weigel C, Garcia-Altares M, Martin K, Hu H, Kufner M, de Beer ZW, Poulsen M, Beemelmanns C.	Antibiotics (Basel)	10.3390/antibiotics7030083	2018
	Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms.	Henao L, Zade RSH, Restrepo S, Husserl J, Abeel T.	BMC Genomics	10.1186/s12864-023-09190-y	2023
	Discovering type I cis-AT polyketides through computational mass spectrometry and genome mining with Seq2PKS.	Yan D, Zhou M, Adduri A, Zhuang Y, Guler M, Liu S, Shin H, Kovach T, Oh G, Liu X, Deng Y, Wang X, Cao L, Sherman DH, Schultz PJ, Kersten RD, Clement JA, Tripathi A, Behsaz B, Mohimani H.	Nat Commun	10.1038/s41467-024-49587-1	2024
	Streptomyces sp. CLV45 from Fabaceae rhizosphere benefits growth of soybean plants.	Horstmann JL, Dias MP, Ortolan F, Medina-Silva R, Astarita LV, Santarem ER.	Braz J Microbiol	10.1007/s42770-020-00301-5	2020
	Design, synthesis, antifungal activities and 3D-QSAR of new N,N'-diacylhydrazines containing 2,4-dichlorophenoxy moiety.	Sun NB, Shi YX, Liu XH, Ma Y, Tan CX, Weng JQ, Jin JZ, Li BJ.	Int J Mol Sci	10.3390/ijms141121741	2013
	Design, synthesis, biological activities and 3D-QSAR of new N,N'-diacylhydrazines containing 2,4-dichlorophenoxy moieties.	Sun GX, Sun ZH, Yang MY, Liu XH, Ma Y, Wei YY.	Molecules	10.3390/molecules181214876	2013
Phylogeny	Streptomyces pyxinae sp. nov. and Streptomyces pyxinicus sp. nov. isolated from lichen Pyxine cocoes (Sw.) Nyl.	Somphong A, Polyiam W, Suriyachadkun C, Sripreechasak P, Harunari E, Igarashi Y, Tanasupawat S, Phongsopitanun W.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006364	2024
Phylogeny	Streptomyces fuscigenes sp. nov., isolated from bamboo (Sasa borealis) litter.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002706	2018

References

#9266	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40065
#18477	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces gelaticus (DSM 40065, AS 4.1444, ATCC 23912)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Compound production

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014649535

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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