Name: Streptomyces gelaticus DSM 40065
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15217

Type strain:

Species: Streptomyces gelaticus

Culture col. no.: DSM 40065, AS 4.1444, ATCC 23912, ATCC 3323, CBS 131.20, CBS 369.39, CBS 833.68, ETH 10211, ETH 16702, IFO 12866, IMET 40285, IMRU 3323, ISP 5065, JCM 4376, KCC S-0376, NBRC 12866, NCIMB 9848, NRRL B-1252, NRRL B-2928, PSA 95, RIA 1118, RIA 89, BCRC 11477, CCM 3177, CGMCC 4.1444, VKM Ac-1704

Strain history: KCC S-0376 <-- IFO 12866 <-- SAJ <-- ISP 5065 <-- IMRU 3323.

NCBI tax ID(s): 285446 (species)

SI-ID 177113

LMG 19376, ATCC 23912, ATCC 3323, CCRC 11477, DSM 40065, IFO 12866, IMET 40285, JCM 4376, NCIMB 9848, NRRL B-1252, CCM 3177, VKM Ac-1704, CBS 833.68, CBS 369.39, CBS 131.20, NBRC 12866, AS 4.1444, BCRC 11477, CGMCC 4.1444

Other strains from Streptomyces gelaticus

S. gelaticus C2828-PD-04942, DSM 41144, IMRU ...

Section

Streptomyces gelaticus DSM 40065 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces gelaticus**
	Full Scientific Name (LPSN)	Streptomyces gelaticus (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces gelaticus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9266]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9266]

Culture medium growth

[Ref.: #9266]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9266]

Culture medium composition

expand / minimize

[Ref.: #9266]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9266]

Culture medium growth

[Ref.: #9266]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9266]	growth	28 °C
[Ref.: #18477]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9266]	Temperature range	mesophilic
[Ref.: #18477]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9266]	Name of produced compound	elaiomycin
[Ref.: #20216]	Name of produced compound	Elaiomycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18477]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18477]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18477]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18477]	mannitol ChEBI	-
[Ref.: #18477]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18477]	raffinose ChEBI	+
[Ref.: #18477]	rhamnose ChEBI	-
[Ref.: #18477]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18477]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18477]	61	+	+	-	-	+	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9266]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ026636 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	125
Soil Samples	1589
Animal Samples	280
Plant Samples	537
Total Samples	2531

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18477]	Biosafety level	1	German classification
[Ref.: #9266]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces gelaticus gene for 16S rRNA, partial sequence, strain: NBRC 12866	AB184202	1466	ENA	285446 tax ID	*
[Ref.: #20218]	Streptomyces gelaticus strain NRRL B-2928 16S ribosomal RNA gene, partial sequence	DQ026636	1483	ENA	285446 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces gelaticus JCM 4376	GCA_014649535	scaffold	GenBank	285446 tax ID	*
[Ref.: #66792]	Streptomyces gelaticus strain JCM 4376	285446.3	wgs	PATRIC	285446 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces gelaticus JCM 4376 NCBI: GCA_014649535.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces gelaticus JCM 4376 NCBI: GCA_014649535.1
[Ref.: #69480]	flagellated	no	97.898	no
[Ref.: #69480]	gram-positive	yes	88.989	no
[Ref.: #69480]	anaerobic	no	99.067	no
[Ref.: #69480]	aerobic	yes	90.668	no
[Ref.: #69480]	halophile	no	96.029	no
[Ref.: #69480]	spore-forming	yes	95.599	no
[Ref.: #69480]	thermophile	no	97.361	yes
[Ref.: #69480]	glucose-util	yes	91.403	yes
[Ref.: #69480]	motile	no	92.935	no
[Ref.: #69480]	glucose-ferment	no	88.78	no

Availability in culture collections External links

[Ref.: #9266]

Culture collection no.

DSM 40065, AS 4.1444, ATCC 23912, ATCC 3323, CBS 131.20, CBS 369.39, CBS 833.68, ETH 10211, ETH 16702, IFO 12866, IMET 40285, IMRU 3323, ISP 5065, JCM 4376, KCC S-0376, NBRC 12866, NCIMB 9848, NRRL B-1252, NRRL B-2928, PSA 95, RIA 1118, RIA 89, BCRC 11477, CCM 3177, CGMCC 4.1444, VKM Ac-1704

[Ref.: #84315]

SI-ID 177113

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces fuscigenes sp. nov., isolated from bamboo (Sasa borealis) litter.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002706	2018	*

References

#9266

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40065

#18477

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84315

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID177113.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces gelaticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces gelaticus JCM 4376

Streptomyces gelaticus JCM 4376

Change proposal

Change proposal