Nicoletella semolina (CCUG 43642)

Name: Nicoletella semolina (CCUG 43642)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 151292

Type strain

Culture col. no. CCUG 43642

NCBI tax ID(s) 271160

Special Collections CCUG

Links

Nicoletella semolina CCUG 43642 is a prokaryote that was isolated from Equine,adult horse,cough.

16S sequence

Name and taxonomic classification

SI-ID 133060

CCUG 43642

@ref 20215

Last LPSN update 2025-12-16 10:06:18

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Nicoletella

Species Nicoletella semolina

Full scientific name Nicoletella semolina Kuhnert et al. 2005

BacDive ID	Other strains from **Nicoletella semolina** (18)	Type strain
11728	N. semolina D1522_98, JF2139, D1522, DSM 16380, CCUG ... (type strain)
144196	N. semolina CCUG 23468, MCCM 00056
144979	N. semolina CCUG 27342, CG 848/89
145040	N. semolina CCUG 27497, CCUG 25592
146800	N. semolina CCUG 32135
146822	N. semolina CCUG 32179
150320	N. semolina CCUG 39639
150998	N. semolina CCUG 42978
151289	N. semolina CCUG 43638
151290	N. semolina CCUG 43640
151291	N. semolina CCUG 43641
151293	N. semolina CCUG 43643
151294	N. semolina CCUG 43644
151295	N. semolina CCUG 43645
151296	N. semolina CCUG 43646
151297	N. semolina CCUG 43647
152092	N. semolina CCUG 45728
152518	N. semolina CCUG 46992

Morphology

Culture and growth conditions

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	metabolism of amino sugars and derivatives	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	Entner Doudoroff pathway	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	valine metabolism	77.78	7 of 9
66794	lipid A biosynthesis	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	68.09	64 of 94
66794	enterobactin biosynthesis	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	serine metabolism	66.67	6 of 9
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	pyrimidine metabolism	64.44	29 of 45
66794	alanine metabolism	62.07	18 of 29
66794	leucine metabolism	61.54	8 of 13
66794	non-pathway related	57.89	22 of 38
66794	methionine metabolism	57.69	15 of 26
66794	heme metabolism	57.14	8 of 14
66794	degradation of pentoses	57.14	16 of 28
66794	citric acid cycle	57.14	8 of 14
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	tryptophan metabolism	52.63	20 of 38
66794	oxidative phosphorylation	51.65	47 of 91
66794	ribulose monophosphate pathway	50	1 of 2
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	NAD metabolism	50	9 of 18
66794	butanoate fermentation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	arginine metabolism	50	12 of 24
66794	ketogluconate metabolism	50	4 of 8
66794	histidine metabolism	48.28	14 of 29
66794	urea cycle	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	lysine metabolism	45.24	19 of 42
66794	lipid metabolism	45.16	14 of 31
66794	nitrate assimilation	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	degradation of sugar alcohols	43.75	7 of 16
66794	propanol degradation	42.86	3 of 7
66794	glutamate and glutamine metabolism	42.86	12 of 28
66794	tyrosine metabolism	42.86	6 of 14
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	glycine metabolism	40	4 of 10
66794	starch degradation	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	metabolism of disaccharids	36.36	4 of 11
66794	sulfoquinovose degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	propionate fermentation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	d-xylose degradation	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	sulfate reduction	23.08	3 of 13
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Equidae (Horse)
#Infection	#Disease	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
55981	Equine,adult horse,cough	1999	Berne	Switzerland	CHE	Europe

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Nicoletella semolina strain CCUG 43642 16S ribosomal RNA gene, partial sequence.	AY508829	1365		271160

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#55981	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 43642
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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