Streptomyces catenulae (DSM 40258, ATCC 12476, ATCC 23893)

Name: Streptomyces catenulae (DSM 40258, ATCC 12476, ATCC 23893)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15070

Type strain

Strain Designation 6563

Culture col. no. DSM 40258 ATCC 12476 ATCC 23893 CBS 679.68 IFO 12848 12 more

NCBI tax ID(s) 66875

Special Collections DSMZ JCM KCTC Wink compendium

History <- E.B. Shirling, ISP <- J. Routien, 6563 KCC S-0353 <-- IFO 12848 <-- SAJ <-- ISP 5258 <-- Chas. Pfizer & Co.; 6563.

Links

Streptomyces catenulae 6563 is a mesophilic prokaryote that produces antibiotic compounds.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 45520

ATCC 12476,ATCC 23893,IFO 12848,DSM 40258,JCM 4353,CCRC 12092,IMET 42944,NRRL B-2342,VKM Ac-758,CBS 679.68,KCTC 9223,AS 4.1701,NBRC 12848,BCRC 12092,HAMBI 986

@ref 20215

Last LPSN update 2026-02-09 11:21:35

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces catenulae

Full scientific name Streptomyces catenulae Davisson and Finlay 1961 (Approved Lists 1980)

BacDive ID	Other strains from **Streptomyces catenulae** (2)	Type strain
15071	S. catenulae DSM 41190, IMRU 3866
127838	S. catenulae ST027561(HKI),

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.014

Multimedia

@ref:	9412
multimedia content:	DSM_40258.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40258.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9412	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9412	positive	growth	28	mesophilic
18571	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.786

Spore formation

@ref	Spore formation	Confidence
125438		90.341

Compound production

@ref	Compound
9412	pepsinostreptin
9412	catenulin
9412	paramomycin
20216	Neomycin E
20216	Neomycin F
20216	pepsinostreptin complex

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18571	NaCl	positive	maximum	5 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₄)

Tolerance

@ref	Compound	Percentage
18571	Lysozyme	1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18571	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18571	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18571	28757 ChEBI	fructose	+/-
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
18571	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18571	29864 ChEBI	mannitol	-
18571	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18571	16634 ChEBI	raffinose	-
18571	26546 ChEBI	rhamnose	-
18571	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18571	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
67770	7934 ChEBI	paromomycin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18571	-	-	-	-	-	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9412	1	Risk group (German classification) According to TRBA 466
18571	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71801v1 assembly for Streptomyces catenulae NRRL B-2342	contig	GCA_000718015	66875.3	2767802077	66875	59.76

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces catenulae 16S rRNA gene, type strain DSM 40258T	AJ621613	1498	66875
20218	Streptomyces catenulae gene for 16S rRNA, partial sequence	AB122748	565	66875
20218	Streptomyces catenulae strain ISP 5258 16S ribosomal RNA gene, partial sequence	AY999778	1497	66875
20218	Streptomyces catenulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4353	D44071	121	66875
20218	Streptomyces catenulae gene for 16S rRNA, partial sequence, strain: NBRC 12848	AB184191	1480	66875
124043	Streptomyces catenulae strain CGMCC 4.1701 16S ribosomal RNA gene, partial sequence.	JN566026	1366	66875

GC content

@ref	GC-content (mol%)	Method
67770	73	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces catenulae NRRL B-2342
NCBI: GCA_000718015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.01	no
125438	anaerobic	anaerobicⓘ	no	96.51	no
125438	aerobic	aerobicⓘ	yes	91.79	no
125438	spore-forming	spore-formingⓘ	yes	90.34	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	89.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Streptomyces catenulae as a Novel Marine Actinobacterium Mediated Silver Nanoparticles: Characterization, Biological Activities, and Proposed Mechanism of Antibacterial Action.	Khalil MA, El-Shanshoury AER, Alghamdi MA, Sun J, Ali SS.	Front Microbiol	10.3389/fmicb.2022.833154	2022
	Seq2Saccharide: Discovering Oligosaccharides and Aminoglycosides Natural Products by Integrating Computational Mass Spectrometry and Genome Mining.	Yan D, Behsaz B, Li Y, Wang X, Skala L, Liu S, Lew HW, Guler M, Jayaprakash H, Zhou M, Cao L, Tripathi A, Clement JA, Mahmud T, Kersten RD, Mohimani H.	J Am Chem Soc	10.1021/jacs.5c08251	2025
Enzymology	Functional characterisation of twelve terpene synthases from actinobacteria.	Chhalodia AK, Xu H, Tabekoueng GB, Gu B, Taizoumbe KA, Lauterbach L, Dickschat JS.	Beilstein J Org Chem	10.3762/bjoc.19.100	2023
	Tandem ketone reduction in pepstatin biosynthesis reveals an F₄₂₀H₂-dependent statine pathway.	Mo J, Sikandar A, Zhao H, Bashiri G, Huo L, Empting M, Muller R, Fu C.	Nat Commun	10.1038/s41467-025-59785-0	2025
	Discriminating two bacteria via laser-induced breakdown spectroscopy and artificial neural network.	Arabi D, Hamdy O, Mohamed MSM, Abdel-Salam Z, Abdel-Harith M.	AMB Express	10.1186/s13568-023-01569-0	2023
	Exploring the mechanisms and mode of action of bioactive compounds from marine Streptomyces albidoflavus against breast carcinoma cells.	Shata AM, Rejili MS, El-Naggar MM, El-Asser SA, Saleh AA, Hafez EE, Haouala F, Youssef AS.	BMC Biotechnol	10.1186/s12896-025-00991-5	2025
	High Versatility of IPP and DMAPP Methyltransferases Enables Synthesis of C₆ , C₇ and C₈ Terpenoid Building Blocks.	Drummond L, Haque PJ, Gu B, Jung JS, Schewe H, Dickschat JS, Buchhaupt M.	Chembiochem	10.1002/cbic.202200091	2022
	Altering the Regioselectivity of Cytochrome P450 BM3 Variant M13 toward Genistein through Protein Engineering and Variation of Reaction Conditions.	Hong LL, Kong JQ.	ACS Omega	10.1021/acsomega.0c05088	2020
	6-Hydroxy-5-nitrobenzo[d]oxazol-2(3H)-one-A degradable derivative of natural 6-Hydroxybenzoxazolin-2(3H)-one produced by Pantoea ananatis.	Schulz M, Sicker D, Schackow O, Hennig L, Hofmann D, Disko U, Ventura M, Basyuk K.	Commun Integr Biol	10.1080/19420889.2017.1302633	2017
Metabolism	Biotransformations of tocopherols by Streptomyces catenulae.	Rousseau B, Dostal L, Rosazza JP.	Lipids	10.1007/s11745-997-0012-5	1997
	FR-900130, a novel amino acid antibiotic. I. Discovery, taxonomy, isolation, and properties.	Kuroda Y, Okuhara M, Goto T, Iguchi E, Kohsaka M, Aoki H, Imanaka H.	J Antibiot (Tokyo)	10.7164/antibiotics.33.125	1980
Metabolism	Biotransformation of 2-benzoxazolinone and 2-hydroxy-1,4-benzoxazin-3-one by endophytic fungi isolated from Aphelandra tetragona.	Zikmundova M, Drandarov K, Bigler L, Hesse M, Werner C.	Appl Environ Microbiol	10.1128/aem.68.10.4863-4870.2002	2002
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Description of Streptomyces explomaris sp. nov., isolated from the coastal soil rhizosphere of Juniperus excelsa and reclassification of Streptomyces libani as a later heterotypic synonym of Streptomyces nigrescens.	Shu W, Ruckert-Reed C, Gromyko O, Tistechok S, Kalinowski J, Luzhetskyy A, Wittmann C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006711	2025
	Genomic and Phenotypic Characterization of Streptomyces sirii sp. nov., Amicetin-Producing Actinobacteria Isolated from Bamboo Rhizospheric Soil.	Zakalyukina YV, Alferova VA, Nikandrova AA, Kiriy AR, Chernyshova AP, Kabilov MR, Baturina OA, Biryukov MV, Sergiev PV, Lukianov DA.	Microorganisms	10.3390/microorganisms12122628	2024
Phylogeny	Streptomyces benahoarensis sp. nov. Isolated From a Lava Tube of La Palma, Canary Islands, Spain.	Gonzalez-Pimentel JL, Hermosin B, Saiz-Jimenez C, Jurado V	Front Microbiol	10.3389/fmicb.2022.907816	2022

References

#9412	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40258
#18571	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces catenulae (DSM 40258, ATCC 12476, ATCC 23893)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000718015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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