Name: Streptomyces catenulae 6563
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15070

Type strain:

Species: Streptomyces catenulae

Strain Designation: 6563

Culture col. no.: DSM 40258, ATCC 12476, ATCC 23893, CBS 679.68, IFO 12848, ISP 5258, NBRC 12848, RIA 1183, JCM 4353, BCRC 12092, CGMCC 4.1701, HAMBI 986, IMET 42944, KCTC 9223, NRRL B-2342, VKM Ac-758

Strain history: KCC S-0353 <-- IFO 12848 <-- SAJ <-- ISP 5258 <-- Chas. Pfizer & Co.; 6563.

NCBI tax ID(s): 66875 (species)

SI-ID 45520

ATCC 12476, ATCC 23893, IFO 12848, DSM 40258, JCM 4353, CCRC 12092, IMET 42944, NRRL B-2342, VKM Ac-758, CBS 679.68, KCTC 9223, AS 4.1701, NBRC 12848, BCRC 12092, HAMBI 986

Special Collections

Other strains from Streptomyces catenulae

Section

Streptomyces catenulae 6563 is a spore-forming, Gram-positive bacterium that produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces catenulae**
	Full Scientific Name (LPSN)	Streptomyces catenulae Davisson and Finlay 1961 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.014

Multimedia content

[Ref.: #9412]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #9412]	growth	28 °C
[Ref.: #18571]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe Confidence in %91.786

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Ability of spore formation

yes Confidence in %90.341

[Ref.: #9412]	Name of produced compound	pepsinostreptin
[Ref.: #9412]	Name of produced compound	catenulin
[Ref.: #9412]	Name of produced compound	paramomycin
[Ref.: #20216]	Name of produced compound	Neomycin E
[Ref.: #20216]	Name of produced compound	Neomycin F
[Ref.: #20216]	Name of produced compound	pepsinostreptin complex

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18571]		NaCl		maximum	5	%

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Observation

quinones: MK-9(H₆), MK-9(H₄)

[Ref.: #18571]	Name of tolerated compound	Lysozyme
[Ref.: #18571]	Tolerance percentage	1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18571]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18571]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #18571]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18571]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18571]	mannitol ChEBI	-
[Ref.: #18571]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18571]	raffinose ChEBI	-
[Ref.: #18571]	rhamnose ChEBI	-
[Ref.: #18571]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18571]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	paromomycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18571]	130	-	-	-	-	-	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18571]	Biosafety level	1	German classification
[Ref.: #9412]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces catenulae 16S rRNA gene, type strain DSM 40258T	AJ621613	1498	GenBank ENA	66875 tax ID	*
[Ref.: #20218]	Streptomyces catenulae gene for 16S rRNA, partial sequence	AB122748	565	GenBank ENA	66875 tax ID	*
[Ref.: #20218]	Streptomyces catenulae strain ISP 5258 16S ribosomal RNA gene, partial sequence	AY999778	1497	GenBank ENA	66875 tax ID	*
[Ref.: #20218]	Streptomyces catenulae gene for 16S ribosomal RNA, partial sequence, strain: JCM 4353	D44071	121	GenBank ENA	66875 tax ID	*
[Ref.: #20218]	Streptomyces catenulae gene for 16S rRNA, partial sequence, strain: NBRC 12848	AB184191	1480	GenBank ENA	66875 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces catenulae NRRL B-2342	GCA_000718015	contig	GenBank ENA	66875 tax ID

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GC-content

73 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces catenulae NRRL B-2342 NCBI: GCA_000718015.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.014	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.505	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.786	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	90.341	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.488	no

Availability in culture collections External links

[Ref.: #9412]

Culture collection no.

DSM 40258, ATCC 12476, ATCC 23893, CBS 679.68, IFO 12848, ISP 5258, NBRC 12848, RIA 1183, JCM 4353, BCRC 12092, CGMCC 4.1701, HAMBI 986, IMET 42944, KCTC 9223, NRRL B-2342, VKM Ac-758

[Ref.: #84176]

SI-ID 45520

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces benahoarensis sp. nov. Isolated From a Lava Tube of La Palma, Canary Islands, Spain.	Gonzalez-Pimentel JL, Hermosin B, Saiz-Jimenez C, Jurado V	Front Microbiol	10.3389/fmicb.2022.907816	2022	*

References

#9412

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40258

#18571

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84176

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45520.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces catenulae NRRL B-2342

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