Name: Streptomyces antibioticus DSM 40234
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14977

Type strain:

Species: Streptomyces antibioticus

Culture col. no.: DSM 40234, ATCC 23879, ATCC 8663, CBS 659.68, ETH 9875, IFO 12838, IMRU 3435, ISP 5234, NBRC 12838, RIA 1174, JCM 4620, BCRC 12164, BCRC 15104, CBS 478.48, CCM 3159, CECT 3225, IMET 40227, KACC 20096, KCTC 9688, LMG 5966, NBIMCC 1047, NCIMB 8504, NRRL B-1701, NRRL B-2770, VKM Ac-964

Strain history: KCC S-0620 <-- IFO 12838 <-- SAJ <-- ISP 5234 <-- IMRU 3435.

NCBI tax ID(s): 1306178 (strain), 1890 (species)

SI-ID 5009

LMG 5966, ATCC 23879, ATCC 8663, CCM 3159, CECT 3225, DSM 40234, IFO 12838, IMET 40227, JCM 4620, NCIB 8504, CCRC 12164, NCIMB 8504, NRRL B-1701, NRRL B-2770, VKM Ac-964, CBS 659.68, CBS 478.48, KCTC 9688, NBRC 12838, BCRC 12164, BCRC 15104, CCRC 15104, KACC 20096, NBIMCC 1047, NCIM 2123

Other strains from Streptomyces antibioticus

Section

Streptomyces antibioticus DSM 40234 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces antibioticus**
	Full Scientific Name (LPSN)	Streptomyces antibioticus (Waksman and Woodruff 1941) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces antibioticus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90.155

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9395]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #9395]	Name of produced compound	actinomycin B
[Ref.: #9395]	Name of produced compound	actinomycin X

	Metabolite production	Metabolite	Production
[Ref.: #67770]		actinomycin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9395]	Sample type/isolated from	soil

[Ref.: #67770]	Sample type/isolated from	Bacteria enriched soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9395]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19428]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces antibioticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4620	D44270	120	GenBank ENA	1306178 tax ID	*
[Ref.: #20218]	Streptomyces antibioticus gene for 16S rRNA, partial sequence, strain: NBRC 12838	AB184184	1477	GenBank ENA	1306178 tax ID	*
[Ref.: #20218]	Streptomyces antibioticus strain NRRL B-1701 16S ribosomal RNA gene, partial sequence	AY999776	1494	GenBank ENA	1890 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces antibioticus DSM 40234	GCA_001514065	scaffold	GenBank ENA	1890 tax ID
[Ref.: #66792]	Streptomyces antibioticus JCM 4620	GCA_001315405	contig	GenBank ENA	1306178 tax ID	*
[Ref.: #66792]	Streptomyces antibioticus JCM 4620	1306178.5	wgs	PATRIC	1306178 tax ID	*
[Ref.: #66792]	Streptomyces antibioticus strain DSM 40234	1890.25	wgs	PATRIC	1890 tax ID	*
[Ref.: #66792]	Streptomyces antibioticus DSM 40234	2862328301	draft	JGI IMG/M	1890 tax ID	*
[Ref.: #66792]	Streptomyces antibioticus JCM 4620	2734481986	draft	JGI IMG/M	1306178 tax ID	*

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GC-content

70.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces antibioticus DSM 40234 NCBI: GCA_001514065.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces antibioticus JCM 4620 PATRIC: 1306178.5
[Ref.: #69480]	motile	no	90.155	no
[Ref.: #69480]	gram-positive	yes	89.97	no
[Ref.: #69480]	anaerobic	no	96.391	no
[Ref.: #69480]	halophile	no	91.65	no
[Ref.: #69480]	spore-forming	yes	74.492	no
[Ref.: #69480]	thermophile	no	97.649	yes
[Ref.: #69480]	glucose-util	yes	85.875	no
[Ref.: #69480]	aerobic	yes	90.759	no
[Ref.: #69480]	flagellated	no	98.178	no
[Ref.: #69480]	glucose-ferment	no	93.692	no

Availability in culture collections External links

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Culture collection no.

DSM 40234, ATCC 23879, ATCC 8663, CBS 659.68, ETH 9875, IFO 12838, IMRU 3435, ISP 5234, NBRC 12838, RIA 1174, JCM 4620, BCRC 12164, BCRC 15104, CBS 478.48, CCM 3159, CECT 3225, IMET 40227, KACC 20096, KCTC 9688, LMG 5966, NBIMCC 1047, NCIMB 8504, NRRL B-1701, NRRL B-2770, VKM Ac-964

[Ref.: #84087]

SI-ID 5009

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Purification and characterization of actinomycins from Streptomyces strain M7 active against methicillin resistant Staphylococcus aureus and vancomycin resistant Enterococcus.	Sharma M, Manhas RK	BMC Microbiol	10.1186/s12866-019-1405-y	2019	*
Phylogeny	Potential antibiotic production of Streptomyces justiciae sp. nov., isolated from the root of Justicia subcoriacea.	Phongsopitanun W, Kanchanasin P, Sripreechasak P, Rueangsawang K, Athipornchai A, Supong K, Pittayakhajonwut P, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005017	2021	*
Metabolism	Inhibition of oxidative stress-induced amyloid beta formation in NT2 neurons by culture filtrate of a strain of Streptomyces antibioticus.	Eftekharzadeh B, Hamedi J, Mohammadipanah F, Khodagholi F, Maghsoudi N, Klenk HP	Appl Microbiol Biotechnol	10.1007/s00253-010-2456-z	2010	*

References

#9395

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40234

#19428

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84087

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5009.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces antibioticus DSM 40234

Streptomyces antibioticus JCM 4620

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