Haemophilus parainfluenzae CCUG 36129 is a bacterium that was isolated from Human throat,child with asthma.
genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pasteurellales |
| Family Pasteurellaceae |
| Genus Haemophilus |
| Species Haemophilus parainfluenzae |
| Full scientific name Haemophilus parainfluenzae Rivers 1922 (Approved Lists 1980) |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | #Child | |
| #Host Body-Site | #Oral cavity and airways | #Throat | |
| #Infection | #Patient | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 53169 | Human throat,child with asthma | 1970 | Birmingham | United Kingdom | GBR | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 33922_D01 assembly for Haemophilus parainfluenzae NCTC10672 | contig | 729 | 75.67 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Haemophilus parainfluenzae strain NCTC 10672 16S ribosomal RNA gene, partial sequence. | JF506651 | 1362 | 729 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.50 | no |
| 125439 | motility | BacteriaNetⓘ | no | 75.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 79.20 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 93.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.92 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 86.37 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.38 | no |
| 125438 | aerobic | aerobicⓘ | no | 88.95 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 95.75 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Laser-assisted microbial culturomics. | Qu T, Koch L, Mukherjee R, Tu Y, Seidel AL, Puttmann LD, Winkel A, Yang I, Grischke J, Liu D, Wolkers WF, Kittler S, Chichkov B, Stiesch M, Szafranski SP. | Nat Commun | 10.1038/s41467-025-66804-7 | 2025 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #53169 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 36129 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive148839.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data