Streptococcus urinalis (DSM 16830, CCUG 41590, CIP 106463)

Name: Streptococcus urinalis (DSM 16830, CCUG 41590, CIP 106463)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14822

Type strain

Culture col. no. DSM 16830 CCUG 41590 CIP 106463 CDC 2285-97

NCBI tax ID(s) 764291 149016

Special Collections DSMZ CCUG CIP

History <- CIP <- CCUG <- R. R. Facklam, CDC; CDC 2285-97 CIP <- 2000, CCUG <- R. Facklam, CDC, Atlanta, USA: strain 981230, Facklamia

Links

Streptococcus urinalis DSM 16830 is a microaerophile, Gram-positive, coccus-shaped bacterium that was isolated from human urine, 55-years old female with cystitis.

Gram-positive coccus-shaped microaerophile 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13435

LMG 19649,CCUG 41590,CIP 106463,NCTC 13766,DSM 16830,CCUG 41825

@ref 20215

Last LPSN update 2026-02-09 11:21:31

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus urinalis

Full scientific name Streptococcus urinalis Collins et al. 2000

BacDive ID	Other strains from **Streptococcus urinalis** (2)	Type strain
155840	S. urinalis CCUG 59460
160578	S. urinalis GH 2807, DSM 25036

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123754	positive	coccus-shaped

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6622	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41654	MEDIUM 6 - Columbia agar with 10 % horse blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
123754	CIP Medium 6	Medium recipe at CIP
123754	CIP Medium 6-Boites-Biorad	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6622	positive	growth	37
41654	positive	growth	37
123754	positive	growth	25-37
123754	negative	growth	10
123754	negative	growth	41
123754	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
6622	microaerophile
123754	facultative anaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123754	NaCl		growth	6.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16988 ChEBI	D-ribose	+	builds acid from	from API rID32STR
123754	4853 ChEBI	esculin	-	hydrolysis
68381	606565 ChEBI	hippurate	+	hydrolysis	from API rID32STR
123754	606565 ChEBI	hippurate	-	hydrolysis
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
123754	17632 ChEBI	nitrate	-	reduction
123754	16301 ChEBI	nitrite	-	reduction
68381	27941 ChEBI	pullulan	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Is resistant
123754		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
123754	86455	optochin

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
123754	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123754	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68382	beta-galactosidase	-	3.2.1.23	from API zym
123754	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68381	beta-glucosidase	+	3.2.1.21	from API rID32STR
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
123754	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123754	gamma-glutamyltransferase	-	2.3.2.2
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
123754	lysine decarboxylase	-	4.1.1.18
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
123754	ornithine decarboxylase	-	4.1.1.17
123754	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68381	urease	-	3.5.1.5	from API rID32STR
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	acetoin degradation	100	3 of 3
66794	L-lactaldehyde degradation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	peptidoglycan biosynthesis	93.33	14 of 15
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	palmitate biosynthesis	86.36	19 of 22
66794	photosynthesis	85.71	12 of 14
66794	glycogen metabolism	80	4 of 5
66794	starch degradation	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	chorismate metabolism	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	pentose phosphate pathway	72.73	8 of 11
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	68.09	64 of 94
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	NAD metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	gluconeogenesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	glycine betaine biosynthesis	60	3 of 5
66794	oxidative phosphorylation	57.14	52 of 91
66794	degradation of sugar alcohols	56.25	9 of 16
66794	valine metabolism	55.56	5 of 9
66794	lipid metabolism	54.84	17 of 31
66794	metabolism of disaccharids	54.55	6 of 11
66794	methionine metabolism	53.85	14 of 26
66794	glutamate and glutamine metabolism	53.57	15 of 28
66794	alanine metabolism	51.72	15 of 29
66794	quinate degradation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	ethanol fermentation	50	1 of 2
66794	suberin monomers biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	tetrahydrofolate metabolism	50	7 of 14
66794	phenylmercury acetate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	isoleucine metabolism	50	4 of 8
66794	ketogluconate metabolism	50	4 of 8
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	urea cycle	46.15	6 of 13
66794	cysteine metabolism	44.44	8 of 18
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of pentoses	42.86	12 of 28
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	tryptophan metabolism	39.47	15 of 38
66794	proline metabolism	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	sphingosine metabolism	33.33	2 of 6
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	arginine metabolism	33.33	8 of 24
66794	lipid A biosynthesis	33.33	3 of 9
66794	enterobactin biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	lysine metabolism	30.95	13 of 42
66794	Entner Doudoroff pathway	30	3 of 10
66794	propionate fermentation	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	mevalonate metabolism	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	flavin biosynthesis	26.67	4 of 15
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	histidine metabolism	24.14	7 of 29
66794	leucine metabolism	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	citric acid cycle	21.43	3 of 14
66794	glutathione metabolism	21.43	3 of 14

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123754	-	+	+	+	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
6622	+	+	-	-	+	-	+	+	+	+	+	+	+	-	-	-	+	+	-	+/-	-	+	+	+	-	+	+	-	+	+	-	-
6622	+	+	-	-	-	-	+	-	-	+	+	-	+	-	-	-	+	+	-	+	-	+	+	-	-	+	-	-	+	-	-	-
6622	+	+	-	-	-	+/-	+	-	-	+	+	-	+	-	-	-	+/-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-
6622	+	+	-	-	-	+	+	-	-	+	+	-	+	-	-	-	+	+	-	+	-	+	+	-	-	+	-	-	+	+	-	-
6622	+	+	-	-	-	+/-	+	-	-	+	+	-	+	-	-	-	+	-	-	+	-	-	+	-	-	+	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Human	#Female
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
6622	human urine, 55-years old female with cystitis	USA	USA	North America
123754	Human

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
6622	yes, in single cases	1	Risk group (German classification) According to TRBA 466
123754		2	Risk group (French classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptococcus urinalis strain DSM 16830 16S ribosomal RNA gene, partial sequence	DQ118675	461	764291
6622	Streptococcus urinalis strain CCUG 41590 16S ribosomal RNA gene, partial sequence	DQ303194	1476	764291
124043	Streptococcus urinalis strain CCUG 41590 16S-23S ribosomal RNA intergenic spacer, partial sequence.	DQ204552	277	149016

GC content

6622

GC-content (mol%)39

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	An unusual Streptococcus from human urine, Streptococcus urinalis sp. nov.	Collins MD, Hutson RA, Falsen E, Nikolaitchouk N, LaClaire L, Facklam RR	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1173	2000

References

#6622	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16830
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41654	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68381	Automatically annotated from API rID32STR .
#68382	Automatically annotated from API zym .
#123754	Collection of Institut Pasteur ; Curators of the CIP; CIP 106463
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptococcus urinalis (DSM 16830, CCUG 41590, CIP 106463)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

Pathway annotation

API zym

API rID32STR

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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