Staphylococcus stepanovicii (DSM 26319, CCM 7717, PCM 2693)

Name: Staphylococcus stepanovicii (DSM 26319, CCM 7717, PCM 2693)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14680

Type strain

Strain Designation 196

Culture col. no. DSM 26319 CCM 7717 PCM 2693 CCUG 72271 196 1 more

NCBI tax ID(s) 643214

Special Collections DSMZ CCUG CIP

History <- CCM <- T. Hauschild; strain 196 CIP <- 2016, DSMZ <- CCM <- T. Hauschild: strain 196

Links

Staphylococcus stepanovicii 196 is an aerobe, Gram-positive, coccus-shaped bacterium that was isolated from bank vole Clethrionomys glareolus.

Gram-positive coccus-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400845

PCM 2693,NCTC 13839,DSM 26319,CCUG 72271T

@ref 20215

Last LPSN update 2026-02-09 11:21:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus stepanovicii

Full scientific name Staphylococcus stepanovicii Hauschild et al. 2012

Synonyms (1)

Mammaliicoccus stepanovicii

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
123310	positive	coccus-shaped

Colony morphology

@ref	Type of hemolysis	Incubation period
18190	gamma	1-2 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41642	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
18190	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
18190	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
123310	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
18190	positive	growth	37
41642	positive	growth	37
63800	positive	growth	37

Physiology and metabolism

Oxygen tolerance

63800

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	+	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	-	fermentation	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68375	17992 ChEBI	sucrose	-	fermentation	from API ID32STA
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	-	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
18190	catalase	+	1.11.1.6
18190	cytochrome-c oxidase	+	1.9.3.1
68375	L-arginine arylamidase	-		from API ID32STA
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68375	urease	+	3.5.1.5	from API ID32STA

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
18190	+	-	-	-	+	+	-	-	-	+	+	-	+	-	+	-	-	-	+	+	-	-	-	-	-	-
18190	+	-	-	-	+	+	+	-	-	+	+	-	-	-	+	-	-	-	+	+	+	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Muridae (Mouse/Rat)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
18190	bank vole Clethrionomys glareolus	Clethrionomys glareolus	north-eastern part	Poland	POL	Europe
63800	Bank vole			Poland	POL	Europe	2009
123310	Bank vole, Clethrionomys glareolus		North eastern part of Poland	Poland	POL	Europe

Taxonmaps

69479

Global distribution of 16S sequence GQ222244 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	251
Soil Samples	269
Animal Samples	6869
Plant Samples	116
Total Samples	7505

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18190	1	Risk group (German classification) According to TRBA 466
123310	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463578v1 assembly for Mammaliicoccus stepanovicii CCM 7717	scaffold	GCA_014635785	643214.11	8109701001	643214	71.45
66792	ASM290252v1 assembly for Mammaliicoccus stepanovicii DSM 26319	scaffold	GCA_002902525	643214.10	2917429644	643214	43.14

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
18190	Staphylococcus stepanovicii strain 196 16S ribosomal RNA gene, partial sequence	GQ222244	1545	643214
124043	Staphylococcus stepanovicii strain CCM 7717 16S ribosomal RNA gene, partial sequence.	MF678967	1284	643214
124043	Staphylococcus stepanovicii strain CCM 7717 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678911	4302	643214

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mammaliicoccus stepanovicii CCM 7717
NCBI: GCA_014635785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	53.90	no
125439	motility	BacteriaNetⓘ	yes	52.00	no
125439	gram_stain	BacteriaNetⓘ	positive	73.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	72.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Mammaliicoccus stepanovicii CCM 7717
NCBI: GCA_014635785.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.66	no
125438	anaerobic	anaerobicⓘ	no	98.41	no
125438	aerobic	aerobicⓘ	yes	69.77	yes
125438	spore-forming	spore-formingⓘ	no	67.69	no
125438	thermophilic	thermophileⓘ	no	94.08	yes
125438	flagellated	motile2+ⓘ	no	82.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus stepanovicii sp. nov., a novel novobiocin-resistant oxidase-positive staphylococcal species isolated from wild small mammals.	Hauschild T, Stepanovic S, Zakrzewska-Czerwinska J	Syst Appl Microbiol	10.1016/j.syapm.2010.03.004	2010

References

#18190	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26319
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#41642	; Curators of the CIP;
#63800	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 72271
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123310	Collection of Institut Pasteur ; Curators of the CIP; CIP 111012
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus stepanovicii (DSM 26319, CCM 7717, PCM 2693)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014635785

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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