Staphylococcus pettenkoferi (DSM 19554, CCUG 51270, CIP 107711)

Name: Staphylococcus pettenkoferi (DSM 19554, CCUG 51270, CIP 107711)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14671

Type strain

Strain Designation B3117

Culture col. no. DSM 19554 CCUG 51270 CIP 107711 B3117 CCM 7495

NCBI tax ID(s) 170573

Special Collections DSMZ CCUG CIP Literature strains

History <- K. Trülzsch; B3117 {2007} 2002, K. Trülzsch, M. von Pettenkofer, Munich, Germany: strain B3117 CIP <- 2002, K. Trülzsch, Max von Pettenkofer Inst., Munich Univ., Munich, Germany: strain B3117

Links

Staphylococcus pettenkoferi B3117 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from human blood culture.

Gram-positive coccus-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 215038

CCUG 51270,CIP 107711,DSM 19554,CCM 7495

@ref 20215

Last LPSN update 2026-02-09 11:21:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus pettenkoferi

Full scientific name Staphylococcus pettenkoferi Trülzsch et al. 2007

Synonyms (1)

"Staphylococcus pettenkoferi"

BacDive ID	Other strains from **Staphylococcus pettenkoferi** (5)	Type strain
155270	S. pettenkoferi CCUG 57156
156679	S. pettenkoferi CCUG 64087
156917	S. pettenkoferi CCUG 67038
157182	S. pettenkoferi CCUG 70234
157208	S. pettenkoferi CCUG 70586

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
31818	positive	coccus-shaped
121790	positive	coccus-shaped

Colony morphology

@ref	Type of hemolysis	Incubation period
8171	gamma	1-2 days
121790

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8171	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
8171	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
36418	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121790	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
8171	positive	growth	37
36418	positive	growth	37
59126	positive	growth	37
121790	positive	growth	22-45
121790	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
31818	facultative anaerobe
59126	aerobe
121790	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
31818
125439		94

Observation

31818

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
31818	28757 ChEBI	fructose	+	carbon source
121790	606565 ChEBI	hippurate	+	hydrolysis
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	-	fermentation	from API ID32STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
31818	17632 ChEBI	nitrate	+	reduction
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
121790	17632 ChEBI	nitrate	+	reduction
121790	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
31818	17992 ChEBI	sucrose	+	carbon source
68375	27082 ChEBI	trehalose	-	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA

Antibiotic resistance

@ref	ChEBI	Metabolite	Is sensitive	Sensitivity conc.
68375	28368	novobiocin		1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA
121790	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
68375	15688 ChEBI	acetoin	-		from API ID32STA
121790	15688 ChEBI	acetoin	-
121790	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121790	alcohol dehydrogenase	-	1.1.1.1
31818	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121790	amylase	-
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68382	beta-galactosidase	-	3.2.1.23	from API zym
121790	beta-galactosidase	-	3.2.1.23
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68382	beta-glucosidase	-	3.2.1.21	from API zym
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
121790	caseinase	-	3.4.21.50
8171	catalase	+	1.11.1.6
31818	catalase	+	1.11.1.6
121790	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
8171	cytochrome-c oxidase	-	1.9.3.1
121790	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121790	gamma-glutamyltransferase	-	2.3.2.2
121790	gelatinase	-
68375	L-arginine arylamidase	-		from API ID32STA
121790	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
121790	lipase	-
68382	lipase (C 14)	-		from API zym
121790	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121790	ornithine decarboxylase	-	4.1.1.17
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
121790	oxidase	-
121790	protease	-
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68382	trypsin	-	3.4.21.4	from API zym
121790	tryptophan deaminase	-
121790	tween esterase	-
31818	urease	+	3.5.1.5
121790	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

59126

Fatty acid	Percentage	ECL
C15:0 ANTEISO	34.2	14.711
C17:0 anteiso	22.2	16.722
C15:0 ISO	20.2	14.621
C17:0 iso	13.1	16.629
C19:0 ANTEISO	5.8	18.729
C18:0	1.1	18
C16:0 iso	1	15.626
C20:0	0.5	20
C18:2 ω6,9c/C18:0 ANTE	0.5	17.724
C16:0	0.5	16
C18:0 ISO	0.4	17.632
C18:1 ω9c	0.4	17.769

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121790	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
8171	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+/-	-	-	-	-
8171	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121790	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Blood culture
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
8171	human blood culture			Germany	DEU	Europe
59126	Human blood	1999	München	Germany	DEU	Europe
121790	Human, Blood		München	Germany	DEU	Europe	2000

Taxonmaps

69479

Global distribution of 16S sequence AF322002 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	511
Soil Samples	456
Animal Samples	6801
Plant Samples	209
Total Samples	7977

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8171	2	Risk group (German classification) According to TRBA 466
121790	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1612793v1 assembly for Staphylococcus pettenkoferi FDAARGOS_1071	complete	GCA_016127935	170573.30		170573	96.82
66792	ASM290268v1 assembly for Staphylococcus pettenkoferi CCUG 51270	scaffold	GCA_002902685	170573.8	2917437079	170573	52.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
8171	Staphylococcus pettenkoferi strain B3117 16S ribosomal RNA gene, partial sequence	AF322002	1547	170573
124043	Staphylococcus pettenkoferi strain DSM 19554 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678898	4299	170573
124043	Staphylococcus pettenkoferi strain DSM 19554 16S ribosomal RNA gene, partial sequence.	MF678954	1283	170573

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus pettenkoferi CCUG 51270
NCBI: GCA_002902685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.00	no
125439	motility	BacteriaNetⓘ	no	79.00	no
125439	gram_stain	BacteriaNetⓘ	positive	74.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	88.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus pettenkoferi strain FDAARGOS_1071 strain Not applicable
PATRIC: 170573.30

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.30	yes
125438	anaerobic	anaerobicⓘ	no	98.92	no
125438	spore-forming	spore-formingⓘ	no	75.02	yes
125438	aerobic	aerobicⓘ	yes	65.23	no
125438	thermophilic	thermophileⓘ	no	95.19	yes
125438	flagellated	motile2+ⓘ	no	81.83	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Comparison of Staphylococcus pettenkoferi Isolated from Human Clinical Cases and Cat Carriers Regarding Antibiotic Susceptibility and Biofilm Production.	Bierowiec K, Delmar A, Karwanska M, Siedlecka M, Kumala-Cwikla A, Ksiazczyk M, Kapczynska K.	Int J Mol Sci	10.3390/ijms26051948	2025
	Two New M23 Peptidoglycan Hydrolases With Distinct Net Charge.	Wysocka A, Jagielska E, Lezniak L, Sabala I.	Front Microbiol	10.3389/fmicb.2021.719689	2021
	Rapid Detection of mecA and femA Genes by Loop-Mediated Isothermal Amplification in a Microfluidic System for Discrimination of Different Staphylococcal Species and Prediction of Methicillin Resistance.	Meng X, Zhang G, Sun B, Liu S, Wang Y, Gao M, Fan Y, Zhang G, Shi G, Kang X.	Front Microbiol	10.3389/fmicb.2020.01487	2020
Genetics	Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes.	Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY.	Foods	10.3390/foods10112839	2021
Phylogeny	Genomic relatedness of Staphylococcus pettenkoferi isolates of different origins.	Mansson E, Hellmark B, Stegger M, Skytt Andersen P, Sundqvist M, Soderquist B.	J Med Microbiol	10.1099/jmm.0.000472	2017
	Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884.	Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium.	Microbiol Resour Announc	10.1128/mra.00062-19	2019
Genetics	Phenotypic and Genotypic Virulence Characterisation of Staphylococcus pettenkoferi Strains Isolated from Human Bloodstream and Diabetic Foot Infections.	Magnan C, Ahmad-Mansour N, Pouget C, Morsli M, Huc-Brandt S, Pantel A, Dunyach-Remy C, Sotto A, Molle V, Lavigne JP.	Int J Mol Sci	10.3390/ijms232415476	2022
Phylogeny	Staphylococcus pettenkoferi sp. nov., a novel coagulase-negative staphylococcal species isolated from human clinical specimens.	Trulzsch K, Grabein B, Schumann P, Mellmann A, Antonenka U, Heesemann J, Becker K	Int J Syst Evol Microbiol	10.1099/ijs.0.64381-0	2007

References

#8171	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19554
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28085	IJSEM 1543 2007 ( DOI 10.1099/ijs.0.64381-0 , PubMed 17625191 )
#31818	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28085
#36418	; Curators of the CIP;
#59126	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51270
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121790	Collection of Institut Pasteur ; Curators of the CIP; CIP 107711
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus pettenkoferi (DSM 19554, CCUG 51270, CIP 107711)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API ID32STA

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016127935

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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