Name: Staphylococcus pettenkoferi B3117
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14671

Type strain:

Species: Staphylococcus pettenkoferi

Strain Designation: B3117

Culture col. no.: DSM 19554, CCUG 51270, CIP 107711, CCM 7495

Strain history: CIP <- 2002, K. Trülzsch, Max von Pettenkofer Inst., Munich Univ., Munich, Germany: strain B3117

NCBI tax ID(s): 170573 (species)

SI-ID 215038

CCUG 51270, CIP 107711, DSM 19554, CCM 7495

Special Collections

Other strains from Staphylococcus pettenkoferi

Section

Staphylococcus pettenkoferi B3117 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that was isolated from human blood culture.

coccus-shaped
Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus pettenkoferi**
	Full Scientific Name (LPSN)	Staphylococcus pettenkoferi Trülzsch et al. 2007

Synonym

"Staphylococcus pettenkoferi"

Information on morphological and physiological properties Morphology

[Ref.: #31818]	Gram stain	positive
[Ref.: #121790]	Gram stain	positive

[Ref.: #31818]	Cell shape	coccus-shaped
[Ref.: #121790]	Cell shape	coccus-shaped

[Ref.: #31818]	Motility	no
[Ref.: #121790]	Motility	no

[Ref.: #8171]	Type of hemolysis	gamma
[Ref.: #8171]	Incubation period	1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8171]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #8171]

Culture medium growth

[Ref.: #8171]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8171]

Culture medium composition

expand / minimize

[Ref.: #8171]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8171]

Culture medium growth

[Ref.: #8171]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8171]

Culture medium composition

expand / minimize

[Ref.: #36418]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36418]

Culture medium growth

[Ref.: #36418]

Culture medium composition

expand / minimize

[Ref.: #121790]

Culture medium

CIP Medium 72

[Ref.: #121790]

Culture medium growth

[Ref.: #121790]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #8171]		growth	37 °C
[Ref.: #36418]		growth	37 °C
[Ref.: #59126]		growth	37 °C
[Ref.: #121790]		growth	22-45 °C
[Ref.: #121790]	no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31818]	Oxygen tolerance	facultative anaerobe
[Ref.: #59126]	Oxygen tolerance	aerobe
[Ref.: #121790]	Oxygen tolerance	facultative anaerobe

[Ref.: #31818]

Ability of spore formation

[Ref.: #31818]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #31818]	fructose ChEBI	+	carbon source
[Ref.: #121790]	hippurate ChEBI	+	hydrolysis
[Ref.: #68375]	lactose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	maltose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	N-acetylglucosamine ChEBI	-	fermentation	* from API ID32STA
[Ref.: #31818]	nitrate ChEBI	+	reduction
[Ref.: #121790]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #121790]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #31818]	sucrose ChEBI	+	carbon source
[Ref.: #68375]	trehalose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	-	fermentation	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #121790]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #121790]	acetoin ChEBI	-
[Ref.: #121790]	glucose ChEBI		-
[Ref.: #68375]	acetoin ChEBI	-		* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121790]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31818]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #121790]	amylase	-
[Ref.: #68375]	arginine dihydrolase	-	3.5.3.6	* from API ID32STA
[Ref.: #121790]	beta-galactosidase	-	3.2.1.23
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA, API zym
[Ref.: #121790]	caseinase	-	3.4.21.50
[Ref.: #8171]	catalase	+	1.11.1.6
[Ref.: #31818]	catalase	+	1.11.1.6
[Ref.: #121790]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #8171]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #121790]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #121790]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #121790]	gelatinase	-
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #121790]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #121790]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121790]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121790]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #121790]	oxidase	-
[Ref.: #121790]	protease	-
[Ref.: #68375]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API ID32STA
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121790]	tryptophan deaminase	-
[Ref.: #121790]	tween esterase	-
[Ref.: #31818]	urease	+	3.5.1.5
[Ref.: #121790]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #59126]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	34.2	14.711
C17:0 anteiso	22.2	16.722
C15:0 ISO	20.2	14.621
C17:0 iso	13.1	16.629
C19:0 ANTEISO	5.8	18.729
C18:0	1.1	18
C16:0 iso	1	15.626
C20:0	0.5	20
C18:2 ω6,9c/C18:0 ANTE	0.5	17.724
C16:0	0.5	16
C18:0 ISO	0.4	17.632
C18:1 ω9c	0.4	17.769

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #121790]	2396	not determinedn.d.	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #8171]	5948	-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+/-	-	-	-	-
[Ref.: #8171]	5947	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121790]	10590	-	+	+	+	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8171]	Sample type/isolated from	human blood culture
[Ref.: #8171]	Country	Germany
[Ref.: #8171]	Country ISO 3 Code	DEU
[Ref.: #8171]	Continent	Europe

[Ref.: #59126]	Sample type/isolated from	Human blood
[Ref.: #59126]	Sampling date	1999
[Ref.: #59126]	Geographic location (country and/or sea, region)	München
[Ref.: #59126]	Country	Germany
[Ref.: #59126]	Country ISO 3 Code	DEU
[Ref.: #59126]	Continent	Europe

[Ref.: #121790]	Sample type/isolated from	Human, Blood
[Ref.: #121790]	Geographic location (country and/or sea, region)	München
[Ref.: #121790]	Country	Germany
[Ref.: #121790]	Country ISO 3 Code	DEU
[Ref.: #121790]	Continent	Europe
[Ref.: #121790]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Blood culture
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF322002 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	511
Soil Samples	456
Animal Samples	6801
Plant Samples	209
Total Samples	7977

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8171]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121790]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8171]	Staphylococcus pettenkoferi strain B3117 16S ribosomal RNA gene, partial sequence	AF322002	1547	GenBank ENA	170573 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus pettenkoferi CCUG 51270	GCA_002902685	scaffold	GenBank ENA	170573 tax ID	*
[Ref.: #66792]	Staphylococcus pettenkoferi strain CCUG 51270	170573.8	wgs	PATRIC	170573 tax ID	*
[Ref.: #66792]	Staphylococcus pettenkoferi strain FDAARGOS_1071	170573.30	complete	PATRIC	170573 tax ID	*
[Ref.: #66792]	Staphylococcus pettenkoferi CCUG 51270	2917437079	draft	JGI IMG/M	170573 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus pettenkoferi strain FDAARGOS_1071 strain Not applicable PATRIC: 170573.30
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.295	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.923	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	75.021	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	65.233	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.192	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	81.833	yes

Availability in culture collections External links

[Ref.: #8171]

Culture collection no.

DSM 19554, CCUG 51270, CIP 107711, CCM 7495

[Ref.: #83797]

SI-ID 215038

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus pettenkoferi sp. nov., a novel coagulase-negative staphylococcal species isolated from human clinical specimens.	Trulzsch K, Grabein B, Schumann P, Mellmann A, Antonenka U, Heesemann J, Becker K	Int J Syst Evol Microbiol	10.1099/ijs.0.64381-0	2007	*

References

#8171

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19554

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31818

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28085 (see below)

#36418 ; Curators of the CIP;
#59126 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51270

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83797

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215038.1 )

#121790 Collection of Institut Pasteur ; Curators of the CIP; CIP 107711

#28085

IJSEM 1543 2007 ( DOI 10.1099/ijs.0.64381-0 , PubMed 17625191 )

* These data were automatically processed and therefore are not curated

Change proposal

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Search for species Staphylococcus pettenkoferi in external resources:
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PANGAEA
GBIF

Staphylococcus pettenkoferi strain FDAARGOS_1071 strain Not applicable

Change proposal

Change proposal