Streptococcus pyogenes (CCUG 31970, NCTC 10879)

Name: Streptococcus pyogenes (CCUG 31970, NCTC 10879)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146699

Type strain

Culture col. no. CCUG 31970 NCTC 10879

NCBI tax ID(s) 1314

Special Collections CCUG

Links

Streptococcus pyogenes CCUG 31970 is a prokaryote that was isolated from Human glomerulonephritis.

genome sequence

Name and taxonomic classification

SI-ID 57988

CCUG 31970,NCTC 10879

@ref 20215

Last LPSN update 2025-12-16 10:05:10

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Streptococcaceae

Genus Streptococcus

Species Streptococcus pyogenes

Full scientific name Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)

BacDive ID	Other strains from **Streptococcus pyogenes** (152)	Type strain
14758	S. pyogenes SF 130, T1, SF 130/13, TI, DSM 20565, ATCC ... (type strain)
14753	S. pyogenes Sv, DSM 2071, ATCC 21059
14754	S. pyogenes Su, DSM 2072, ATCC 21060, CCUG 44926
14755	S. pyogenes II D 703 (S-43), DSM 2073
14756	S. pyogenes II D 697 (T-3), DSM 2074
14757	S. pyogenes Bruno, DSM 11728, ATCC 19615, CIP 104226, ...
14759	S. pyogenes DSM 25932, NCCP 11611
14760	S. pyogenes DSM 25943, NCCP 11610
14761	S. pyogenes DSM 25952, NCCP 11609
14762	S. pyogenes DSM 25953, NCCP 11627
134404	S. pyogenes T2 44/RB/4, CIP 56.42, IMET 3005, NCTC 8322, ...
134405	S. pyogenes blue, CIP 56.44
134406	S. pyogenes A30t30, D24/46, CIP 56.67
134409	S. pyogenes T5 B, CIP 56.46, ATCC 12347, IMET 3021, NCTC ...
134410	S. pyogenes SF4, CIP 56.49, NCTC 8324, CCUG 37685
134411	S. pyogenes Lowe, CCUG 12714, CIP 56.54, IMET 3049, NCTC ...
134566	S. pyogenes 73, CIP 106462
134724	S. pyogenes 63T, CIP 56.59, ATCC 10403, IMET 3067, NCTC ...
134725	S. pyogenes A211t15, CIP 56.55
134727	S. pyogenes 44273, A31t31, CIP 56.68
134728	S. pyogenes CIP 56.69
134729	S. pyogenes A138t34, C/141/82/2, CIP 56.70
134868	S. pyogenes CIP A241
135164	S. pyogenes T 23/RB 5, CIP 56.60, NCTC 8301
135298	S. pyogenes C 203S, CIP 82.52, ATCC 21546
135305	S. pyogenes S 43/78, CIP 56.47, IMET 3024, NCTC 8302, ...
135319	S. pyogenes Symons, CIP 56.50, ATCC 12350, NCTC 8316, ...
135328	S. pyogenes CIP 56.51, ATCC 21548, IMET 3035, NCTC 8318
135366	S. pyogenes 3722/17, CIP 56.52, NCTC 8300
135593	S. pyogenes Henson Rb4, A53t44, CIP 56.75
135594	S. pyogenes CIP 56.71
135595	S. pyogenes A34t37, C/242, CIP 56.72
135596	S. pyogenes A278t39, C/95/12B, CIP 56.73
135597	S. pyogenes C/101/21/2, A141t41, CIP 56.74
135664	S. pyogenes S 84, A78 t3, CIP 70.3, IMET 3014, NCTC 9994
135715	S. pyogenes AYN W28, A814/4, CIP 81.98
136271	S. pyogenes A113, B 3264, CIP 56.79, IMET 3114
136379	S. pyogenes A498, CIP 105079
136535	S. pyogenes 29, CIP 106521
136574	S. pyogenes 02C1061, CIP 107003
136584	S. pyogenes Richards G III, A6t3, CIP 56.43
136609	S. pyogenes 4990, CIP 56.45, NCTC 8326, CCUG 11875
136697	S. pyogenes Digonnet 7, CIP 56.1
136937	S. pyogenes A456, CIP 108246
137040	S. pyogenes Glossy, A39t6, CIP 56.48
137042	S. pyogenes Glover, CIP 56.53, ATCC 12354, NCTC 8314
137053	S. pyogenes 58, CIP 106522
137259	S. pyogenes CIP 56.78, IMET 3114, Imp 19
137464	S. pyogenes J17/E/19, CIP 56.56, ATCC 12356, IMET 3058, ...
137465	S. pyogenes J 17 C, CIP 56.57, ATCC 12357, IMET 3060, ...
137466	S. pyogenes J17 D/50, CIP 56.58, ATCC 12358, IMET 3065, ...
137468	S. pyogenes Small, CIP 56.65, IMET 3082, NCTC 8308, CCUG ...
138371	S. pyogenes GAS-MA38, CIP 106883
138372	S. pyogenes GAS-MAS5, CIP 106884
138388	S. pyogenes 02C1110, CIP 107002
138478	S. pyogenes C 203 M, CIP 54.5, ATCC 8668, NCIMB 8884
138830	S. pyogenes C 98/97, CIP 56.61, ATCC 10782, IMET 3072, ...
138831	S. pyogenes C/105, A37t46, CIP 56.76
138832	S. pyogenes C 744, A280t47, CIP 56.77
138835	S. pyogenes SF 40, CIP 56.64, NCTC 8328
139034	S. pyogenes Coggins, CIP 56.66, ATCC 10096, IMET 3084, ...
141407	S. pyogenes CCUG 1484
141438	S. pyogenes CCUG 1850
141441	S. pyogenes CCUG 1863
141442	S. pyogenes CCUG 1866
141447	S. pyogenes CCUG 1899
141449	S. pyogenes CCUG 1902
141450	S. pyogenes CCUG 1908
141451	S. pyogenes CCUG 1914
142341	S. pyogenes CCUG 11876, ATCC 12204, NCTC 8306
142501	S. pyogenes CCUG 12702
142502	S. pyogenes CCUG 12703
142503	S. pyogenes CCUG 12704
142504	S. pyogenes CCUG 12705
142505	S. pyogenes CCUG 12710
142506	S. pyogenes CCUG 12711
142507	S. pyogenes CCUG 12712
142508	S. pyogenes CCUG 12722
142509	S. pyogenes CCUG 12733, CNCTC 50/58, ATCC 12365, NCTC ...
142510	S. pyogenes CCUG 12742, CNCTC 19/69, ATCC 12374
142511	S. pyogenes CCUG 12743, ATCC 12375, CNCTC 21/70, CNCTC ...
142512	S. pyogenes CCUG 12746, CNCTC 63/59, ATCC 12377, NCTC ...
142513	S. pyogenes CCUG 12752, NCTC 10870
142514	S. pyogenes CCUG 12753, NCTC 10871
142515	S. pyogenes CCUG 12759
143162	S. pyogenes CCUG 17614
143163	S. pyogenes CCUG 17618
143379	S. pyogenes CCUG 18793, ATCC 14919
144133	S. pyogenes CCUG 23117
144529	S. pyogenes CCUG 25570
144530	S. pyogenes CCUG 25571
145518	S. pyogenes CCUG 28734
146327	S. pyogenes CCUG 30916, CNCTC 29/56
146328	S. pyogenes CCUG 30917, CNCTC 4/59
146441	S. pyogenes CCUG 31150
146739	S. pyogenes CCUG 32045, CNCTC Str 12/78
146740	S. pyogenes CCUG 32046, CNCTC Str 16/78
146884	S. pyogenes CCUG 32363
146932	S. pyogenes CCUG 32468
147000	S. pyogenes CCUG 32628
147001	S. pyogenes CCUG 32629
147085	S. pyogenes CCUG 32826
147086	S. pyogenes CCUG 32827
147087	S. pyogenes CCUG 32828
147212	S. pyogenes CCUG 33060, ATCC 14289
147345	S. pyogenes CCUG 33409
147558	S. pyogenes CCUG 33800, CNCTC 40/58
147559	S. pyogenes CCUG 33801
148307	S. pyogenes CCUG 35195
148407	S. pyogenes CCUG 35389
148947	S. pyogenes CCUG 36624
148978	S. pyogenes CCUG 36673
149389	S. pyogenes CCUG 37630, NCTC 100109
149390	S. pyogenes CCUG 37631
149401	S. pyogenes CCUG 37679
149402	S. pyogenes CCUG 37680
149403	S. pyogenes CCUG 37681
149404	S. pyogenes CCUG 37682
149405	S. pyogenes CCUG 37683
149406	S. pyogenes CCUG 37684
149407	S. pyogenes CCUG 37687
149408	S. pyogenes CCUG 37688
149409	S. pyogenes CCUG 37689
149410	S. pyogenes CCUG 37690
149411	S. pyogenes CCUG 37691
149412	S. pyogenes CCUG 37692
149413	S. pyogenes CCUG 37693
149414	S. pyogenes CCUG 37694
149415	S. pyogenes CCUG 37695
149416	S. pyogenes CCUG 37696
149417	S. pyogenes CCUG 37697
149418	S. pyogenes CCUG 37698
149419	S. pyogenes CCUG 37699
149866	S. pyogenes CCUG 38578
149942	S. pyogenes CCUG 38726, CNCTC 31/59
150169	S. pyogenes CCUG 39158
150402	S. pyogenes CCUG 39833
151150	S. pyogenes CCUG 43366
151787	S. pyogenes CCUG 44879
152529	S. pyogenes CCUG 47009
152859	S. pyogenes CCUG 47803, CECT 5109, ATCC 700294
153331	S. pyogenes CCUG 49246
153336	S. pyogenes CCUG 49264
153762	S. pyogenes CCUG 50872
154426	S. pyogenes CCUG 53553
155347	S. pyogenes CCUG 57411
155552	S. pyogenes CCUG 58107
156308	S. pyogenes CCUG 61116
156637	S. pyogenes CCUG 63781
156705	S. pyogenes CCUG 64251
156796	S. pyogenes CCUG 65322
176605	S. pyogenes OK2, DSM 120744

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	95.2
125438		93

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	98.3

Spore formation

@ref	Spore formation	Confidence
125439		95.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	+	hydrolysis	from API rID32STR
68380	29016 ChEBI	arginine	+	hydrolysis	from API rID32A
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68380	16024 ChEBI	D-mannose	+	fermentation	from API rID32A
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	+	builds acid from	from API rID32STR
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68381	27941 ChEBI	pullulan	+	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	+	builds acid from	from API rID32STR
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68380	35581 ChEBI	indole		-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	+	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68380	alkaline phosphatase	+	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	+	3.2.1.20	from API rID32A
68381	arginine dihydrolase	+	3.5.3.6	from API rID32STR
68380	arginine dihydrolase	+	3.5.3.6	from API rID32A
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68380	beta-galactosidase	+	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	+		from API rID32A
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68380	beta-glucosidase	+	3.2.1.21	from API rID32A
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	+		from API rID32A
68381	glycyl tryptophan arylamidase	-		from API rID32STR
68380	histidine arylamidase	+		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
68380	leucine arylamidase	+	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	+	3.4.11.1	from API rID32A
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	+		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68381	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32STR
68380	pyrrolidonyl arylamidase	+	3.4.19.3	from API rID32A
68380	serine arylamidase	+		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	+		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A
68381	urease	-	3.5.1.5	from API rID32STR

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
50750	-	+	-	+	+	+	+	-	-	-	+	-	-	-	-	-	+	+	-	+	+	+	+	+	+	+	+	-	+

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
50750	+	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	-	+	-	+	-	-	-	-	+	+	-	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Infection	#Inflammation
#Infection	#Patient

Isolation

50750

Sample typeHuman glomerulonephritis

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	44451_G01 assembly for Streptococcus pyogenes NCTC10879	complete	GCA_900475455	1314.750	2925793033	1314	99.38

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptococcus pyogenes NCTC10879
NCBI: GCA_900475455

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.90	no
125439	motility	BacteriaNetⓘ	no	89.40	no
125439	gram_stain	BacteriaNetⓘ	positive	95.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptococcus pyogenes NCTC10879
NCBI: GCA_900475455.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.51	no
125438	anaerobic	anaerobicⓘ	no	93.24	no
125438	aerobic	aerobicⓘ	no	96.60	no
125438	spore-forming	spore-formingⓘ	no	87.47	no
125438	thermophilic	thermophileⓘ	no	97.41	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50750	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31970
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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