Name: Bergeyella zoohelcum CCUG 30536
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 146183

Type strain:

Species: Bergeyella zoohelcum

Culture col. no.: CCUG 30536, NCTC 11661

NCBI tax ID(s): 883098 (strain), 1015 (species)

SI-ID 7273

LMG 12997, CCUG 30536, NCTC 11661

Other strains from Bergeyella zoohelcum

Section

Bergeyella zoohelcum CCUG 30536 is a Gram-negative bacterium that was isolated from Human blood.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Bergeyella*
	Species	**Bergeyella zoohelcum**
	Full Scientific Name (LPSN)	Bergeyella zoohelcum (Holmes et al. 1987) Vandamme et al. 1994

Synonym

Weeksella zoohelcum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #50135]	7564	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #50135]	Sample type/isolated from	Human blood
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bergeyella zoohelcum NCTC11661	GCA_900445675	contig	GenBank	1015 tax ID	*
[Ref.: #66792]	Bergeyella zoohelcum CCUG 30536	GCA_000301095	scaffold	GenBank	883098 tax ID	*
[Ref.: #66792]	Bergeyella zoohelcum CCUG 30536	883098.3	wgs	PATRIC	883098 tax ID	*
[Ref.: #66792]	Bergeyella zoohelcum strain NCTC11661	1015.4	wgs	PATRIC	1015 tax ID	*
[Ref.: #66792]	Bergeyella zoohelcum CCUG 30536	2537561902	draft	JGI IMG/M	883098 tax ID	*
[Ref.: #66792]	Bergeyella zoohelcum NCTC 11661	2808606806	draft	JGI IMG/M	1015 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bergeyella zoohelcum CCUG 30536 CCUG 30536 NCBI: GCA_000301095.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bergeyella zoohelcum CCUG 30536 CCUG 30536 NCBI: GCA_000301095.1
[Ref.: #69480]	motile	no	90.363	no
[Ref.: #69480]	flagellated	no	97.163	no
[Ref.: #69480]	gram-positive	no	98.462	no
[Ref.: #69480]	anaerobic	no	96.446	no
[Ref.: #69480]	aerobic	no	50	no
[Ref.: #69480]	halophile	no	94.334	no
[Ref.: #69480]	spore-forming	no	95.958	no
[Ref.: #69480]	glucose-util	yes	64.867	yes
[Ref.: #69480]	thermophile	no	97.572	no
[Ref.: #69480]	glucose-ferment	no	91.231	yes

Availability in culture collections External links

[Ref.: #50135]

Culture collection no.

CCUG 30536, NCTC 11661

[Ref.: #101098]

SI-ID 7273

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#50135 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30536

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#101098

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7273.1 )

* These data were automatically processed and therefore are not curated

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Bergeyella zoohelcum CCUG 30536 CCUG 30536

Bergeyella zoohelcum CCUG 30536 CCUG 30536

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