Staphylococcus delphini Heidy is a facultative anaerobe, mesophilic, Gram-positive prokaryote that was isolated from purulent material from a dolphin living in an aquarium.
Gram-positive coccus-shaped facultative anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus delphini |
| Full scientific name Staphylococcus delphini Varaldo et al. 1988 |
| BacDive ID | Other strains from Staphylococcus delphini (2) | Type strain |
|---|---|---|
| 150096 | S. delphini CCUG 38984 | |
| 153956 | S. delphini CCUG 51769, CCM 2618 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9075 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9075 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 40771 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 118888 | CIP Medium 72 | Medium recipe at CIP | |||
| 118888 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 9075 | A11.02 | A3alpha L-Lys-Gly5-6 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68375 | 16899 ChEBI | D-mannitol | + | fermentation | from API ID32STA |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68375 | 16024 ChEBI | D-mannose | + | fermentation | from API ID32STA |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68375 | 16988 ChEBI | D-ribose | + | fermentation | from API ID32STA |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68375 | 17306 ChEBI | maltose | + | fermentation | from API ID32STA |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68375 | 59640 ChEBI | N-acetylglucosamine | + | fermentation | from API ID32STA |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 68375 | 17632 ChEBI | nitrate | + | reduction | from API ID32STA |
| 118888 | 17632 ChEBI | nitrate | + | reduction | |
| 118888 | 16301 ChEBI | nitrite | - | reduction | |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68375 | 17992 ChEBI | sucrose | + | fermentation | from API ID32STA |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68375 | 27082 ChEBI | trehalose | - | fermentation | from API ID32STA |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ChEBI | Metabolite | Is antibiotic | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|---|
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Chebi-ID | Metabolite | Voges-proskauer-test | |
|---|---|---|---|---|
| 68375 | 15688 ChEBI | acetoin | - | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68375 | alkaline phosphatase | + | 3.1.3.1 | from API ID32STA |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68375 | beta-galactosidase | + | 3.2.1.23 | from API ID32STA |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 118888 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68375 | L-arginine arylamidase | - | from API ID32STA | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 118888 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 118888 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118888 | not determinedn.d. | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | +/- | + | - | - | +/- | + | - | - | - | - | - | + | + | - | + | + | - | - | - | +/- | - | - | - | + | - | - | - | - | - | - | +/- | - | - |
| @ref | URE | ADH (Arg) | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | Reduction of nitrateNIT | Acetoin production (Voges Proskauer test)VP | beta GAL | L-arginine arylamidaseArgA | PAL | Pyrrolidonyl arylamidasePyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9075 | + | + | - | - | + | + | + | + | + | - | + | - | + | - | + | - | + | - | + | + | - | + | + | + | - | - | |
| 9075 | + | + | - | - | + | + | + | + | +/- | - | + | - | + | - | + | - | + | - | + | + | - | + | + | +/- | - | - | |
| 9075 | - | - | - | - | + | + | + | + | + | - | + | - | + | - | not determinedn.d. | - | + | - | + | +/- | - | + | + | +/- | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) | |
| #Infection | #Inflammation | - | |
| #Host | #Mammals | #Aquatic mammal | |
| #Host Body Product | #Fluids | - |
Global distribution of 16S sequence AB009938 (>99% sequence identity) for Staphylococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM358532v1 assembly for Staphylococcus delphini Heidy | contig | 53344 | 61.13 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Staphylococcus delphini strain DSM 20771 16S ribosomal RNA gene, partial sequence | AY688050 | 464 | 53344 | ||
| 20218 | Staphylococcus delphini strain ATCC 49171 16S ribosomal RNA gene, partial sequence | EU157196 | 366 | 53344 | ||
| 9075 | Staphylococcus delphini rrn gene for 16S ribosomal RNA | AB009938 | 1493 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157195 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157197 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157198 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157199 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157200 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157201 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157202 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157203 | 366 | 53344 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157204 | 366 | 1141105 | ||
| 124043 | Staphylococcus delphini strain HT20030679 16S ribosomal RNA gene, partial sequence. | EU157205 | 366 | 53344 |
| 9075 | GC-content (mol%)39.0 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 51.90 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 52.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 72.90 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 94.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 84.98 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 99.42 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 66.93 | no |
| 125438 | aerobic | aerobicⓘ | no | 51.87 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | no |
| 125438 | flagellated | motile2+ⓘ | no | 80.03 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Metabolism | Identification and Characterization of Staphylococcus delphini Internalization Pathway in Nonprofessional Phagocytic Cells. | Maali Y, Diot A, Martins-Simoes P, Bes M, Bouvard D, Vandenesch F, Verhoeven PO, Laurent F, Trouillet-Assant S. | Infect Immun | 10.1128/iai.00002-20 | 2020 | |
| Enzymology | Performance of Five Commercial Identification Platforms for Identification of Staphylococcus delphini. | Canver MC, Tekle T, Compton ST, Callan K, Burd EM, Zimmer BL, Bemis DA, Carroll KC, Westblade LF. | J Clin Microbiol | 10.1128/jcm.00721-19 | 2019 | |
| Enzymology | The Non-Lantibiotic Bacteriocin Garvicin Q Targets Man-PTS in a Broad Spectrum of Sensitive Bacterial Genera. | Tymoszewska A, Diep DB, Wirtek P, Aleksandrzak-Piekarczyk T. | Sci Rep | 10.1038/s41598-017-09102-7 | 2017 | |
| Pathogenicity | BacSJ-Another Bacteriocin with Distinct Spectrum of Activity that Targets Man-PTS. | Tymoszewska A, Walczak P, Aleksandrzak-Piekarczyk T. | Int J Mol Sci | 10.3390/ijms21217860 | 2020 | |
| Phylogeny | Comparative study using various methods for identification of Staphylococcus species in clinical specimens. | Layer F, Ghebremedhin B, Moder KA, Konig W, Konig B. | J Clin Microbiol | 10.1128/jcm.00226-06 | 2006 | |
| Methicillin-resistant Staphylococcus pseudintermedius infection in a bone marrow transplant recipient. | Savini V, Barbarini D, Polakowska K, Gherardi G, Bialecka A, Kasprowicz A, Polilli E, Marrollo R, Di Bonaventura G, Fazii P, D'Antonio D, Miedzobrodzki J, Carretto E. | J Clin Microbiol | 10.1128/jcm.03310-12 | 2013 | ||
| Enzymology | Staphylococcus spp., Streptococcus canis, and Arcanobacterium phocae of healthy Canadian farmed mink and mink with pododermatitis. | Chalmers G, McLean J, Hunter DB, Brash M, Slavic D, Pearl DL, Boerlin P. | Can J Vet Res | 2015 | ||
| Phylogeny | Molecular diagnostic identification of Staphylococcus pseudintermedius. | Bannoehr J, Franco A, Iurescia M, Battisti A, Fitzgerald JR. | J Clin Microbiol | 10.1128/jcm.01915-08 | 2009 | |
| Pathogenicity | Population genetic structure of the Staphylococcus intermedius group: insights into agr diversification and the emergence of methicillin-resistant strains. | Bannoehr J, Ben Zakour NL, Waller AS, Guardabassi L, Thoday KL, van den Broek AH, Fitzgerald JR. | J Bacteriol | 10.1128/jb.01150-07 | 2007 | |
| Phylogeny | Identification of Staphylococcus spp. by PCR-restriction fragment length polymorphism of gap gene. | Yugueros J, Temprano A, Sanchez M, Luengo JM, Naharro G. | J Clin Microbiol | 10.1128/jcm.39.10.3693-3695.2001 | 2001 | |
| Enzymology | Microdiversity of deep-sea Bacillales isolated from Tyrrhenian sea sediments as revealed by ARISA, 16S rRNA gene sequencing and BOX-PCR fingerprinting. | Ettoumi B, Guesmi A, Brusetti L, Borin S, Najjari A, Boudabous A, Cherif A. | Microbes Environ | 10.1264/jsme2.me13013 | 2013 | |
| Enzymology | Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples. | Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.38.9.3280-3284.2000 | 2000 | |
| Phylogeny | Development of a PCR assay for identification of staphylococci at genus and species levels. | Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.39.7.2541-2547.2001 | 2001 | |
| Phylogeny | Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target. | Poyart C, Quesne G, Boumaila C, Trieu-Cuot P. | J Clin Microbiol | 10.1128/jcm.39.12.4296-4301.2001 | 2001 | |
| Phylogeny | Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization. | Goh SH, Santucci Z, Kloos WE, Faltyn M, George CG, Driedger D, Hemmingsen SM. | J Clin Microbiol | 10.1128/jcm.35.12.3116-3121.1997 | 1997 | |
| Phylogeny | Staphylococcus ursi sp. nov., a new member of the 'Staphylococcus intermedius group' isolated from healthy black bears. | Perreten V, Kania SA, Bemis D | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004324 | 2020 |
| #9075 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20771 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40771 | ; Curators of the CIP; |
| #49910 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30107 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68375 | Automatically annotated from API ID32STA . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #118888 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103732 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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