Name: Staphylococcus delphini Heidy
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14521

Type strain:

Species: Staphylococcus delphini

Strain Designation: Heidy

Culture col. no.: CCUG 30107, CCM 4115, DSM 20771, ATCC 49171, CIP 103732, NCIMB 13206

Strain history: CIP <- 1993, P.E. Varaldo, Ancona Univ., Ancona, Italy: strain Heidy

NCBI tax ID(s): 53344 (species)

SI-ID 46869

ATCC 49171, DSM 20771, CCUG 30107, CCM 4115, CIP 103732, NCIMB 13206, KCTC 3592, NCTC 12225, LMG 22190, BCRC 15270, CCRC 15270, NRRL B-14767

Other strains from Staphylococcus delphini

S. delphini CCUG 38984
S. delphini CCUG 51769, CCM 2618

Section

Staphylococcus delphini Heidy is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from purulent material from a dolphin living in an aquarium.

coccus-shaped
Gram-positive
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus delphini**
	Full Scientific Name (LPSN)	Staphylococcus delphini Varaldo et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #118888]	Gram stain	positive

[Ref.: #118888]	Cell shape	coccus-shaped

[Ref.: #118888]	Motility	no

[Ref.: #9075]

Type of hemolysis

gamma

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9075]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #9075]

Culture medium growth

[Ref.: #9075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9075]

Culture medium composition

expand / minimize

[Ref.: #9075]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9075]

Culture medium growth

[Ref.: #9075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9075]

Culture medium composition

expand / minimize

[Ref.: #40771]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40771]

Culture medium growth

[Ref.: #40771]

Culture medium composition

expand / minimize

[Ref.: #118888]

Culture medium

CIP Medium 72

[Ref.: #118888]

Culture medium growth

[Ref.: #118888]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #118888]

Culture medium

CIP Medium 3

[Ref.: #118888]

Culture medium growth

[Ref.: #118888]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9075]	growth	37 °C
[Ref.: #40771]	growth	37 °C
[Ref.: #49910]	growth	37 °C

[Ref.: #9075]	Temperature range	mesophilic
[Ref.: #40771]	Temperature range	mesophilic
[Ref.: #49910]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #118888]

Oxygen tolerance

facultative anaerobe

[Ref.: #9075]	Murein short key	A11.02
[Ref.: #9075]	Murein types	A3alpha L-Lys-Gly_5-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-mannose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	D-ribose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #118888]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #118888]	nitrite ChEBI	-	reduction
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68375]	trehalose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68375]		novobiocin ChEBI	yes	1.8	µg	* from API ID32STA

	Metabolite production	Metabolite	Production
[Ref.: #118888]		indole ChEBI	no
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	+	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68375]	beta-galactosidase	+	3.2.1.23	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA, API zym
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA, API zym
[Ref.: #118888]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #118888]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118888]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #118888]	9379	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	+/-	+	-	-	+/-	+	-	-	-	-	-	+	+	-	+	+	-	-	-	+/-	-	-	-	+	-	-	-	-	-	-	+/-	-	-

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #9075]	6085	+	+	-	-	+	+	+	+	+	-	+	-	+	-	+	-	+	-	+	+	-	+	+	+	-	-
[Ref.: #9075]	6084	+	+	-	-	+	+	+	+	+/-	-	+	-	+	-	+	-	+	-	+	+	-	+	+	+/-	-	-
[Ref.: #9075]	6083	-	-	-	-	+	+	+	+	+	-	+	-	+	-	not determinedn.d.	-	+	-	+	+/-	-	+	+	+/-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118888]	7650	-	+	+	+	-	+	-	-	-	-	+	+	-	+	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9075]	Sample type/isolated from	purulent material from a dolphin living in an aquarium
[Ref.: #9075]	Geographic location (country and/or sea, region)	Genoa
[Ref.: #9075]	Country	Italy
[Ref.: #9075]	Country ISO 3 Code	ITA
[Ref.: #9075]	Continent	Europe

[Ref.: #49910]	Sample type/isolated from	Dolphin,purulent skin lesion
[Ref.: #49910]	Country	Italy
[Ref.: #49910]	Country ISO 3 Code	ITA
[Ref.: #49910]	Continent	Europe

[Ref.: #118888]	Sample type/isolated from	Environment, Purulent material from aquarium dolphins
[Ref.: #118888]	Geographic location (country and/or sea, region)	Liguria
[Ref.: #118888]	Country	Italy
[Ref.: #118888]	Country ISO 3 Code	ITA
[Ref.: #118888]	Continent	Europe
[Ref.: #118888]	Isolation date	1975
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Water reservoir (Aquarium/pool)
#Infection	#Inflammation	-
#Host	#Mammals	#Aquatic mammal
#Host Body Product	#Fluids	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB009938 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	5
Soil Samples	3
Animal Samples	399
Plant Samples	6
Total Samples	413

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9075]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118888]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9075]	Staphylococcus delphini rrn gene for 16S ribosomal RNA	AB009938	1493	ENA	53344 tax ID
[Ref.: #20218]	Staphylococcus delphini strain ATCC 49171 16S ribosomal RNA gene, partial sequence	EU157196	366	ENA	53344 tax ID	*
[Ref.: #20218]	Staphylococcus delphini strain DSM 20771 16S ribosomal RNA gene, partial sequence	AY688050	464	ENA	53344 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus delphini Heidy	GCA_003585325	contig	GenBank	53344 tax ID	*
[Ref.: #66792]	Staphylococcus delphini strain Heidy	53344.20	wgs	PATRIC	53344 tax ID	*
[Ref.: #66792]	Staphylococcus delphini Heidy	2917461297	draft	JGI IMG/M	53344 tax ID	*

[Ref.: #9075]

GC-content

39.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus delphini strain Heidy PATRIC: 53344.20
[Ref.: #69480]	gram-positive	yes	88.353	no
[Ref.: #69480]	anaerobic	no	99.262	no
[Ref.: #69480]	halophile	yes	87.878	no
[Ref.: #69480]	spore-forming	no	82.886	no
[Ref.: #69480]	glucose-util	yes	87.133	no
[Ref.: #69480]	thermophile	no	99.774	yes
[Ref.: #69480]	aerobic	yes	92.164	no
[Ref.: #69480]	motile	no	91.831	no
[Ref.: #69480]	flagellated	no	92.164	no
[Ref.: #69480]	glucose-ferment	yes	82.858	yes

Availability in culture collections External links

[Ref.: #9075]

Culture collection no.

CCUG 30107, CCM 4115, DSM 20771, ATCC 49171, CIP 103732, NCIMB 13206

[Ref.: #83652]

SI-ID 46869

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus ursi sp. nov., a new member of the 'Staphylococcus intermedius group' isolated from healthy black bears.	Perreten V, Kania SA, Bemis D	Int J Syst Evol Microbiol	10.1099/ijsem.0.004324	2020	*

References

#9075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20771

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40771 ; Curators of the CIP;
#49910 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30107

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68375

Automatically annotated from API ID32STA .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83652

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID46869.1 )

#118888 Collection of Institut Pasteur ; Curators of the CIP; CIP 103732
* These data were automatically processed and therefore are not curated

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Staphylococcus delphini strain Heidy

Change proposal

Change proposal