Name: Salinicoccus halodurans W24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14435

Type strain:

Species: Salinicoccus halodurans

Strain Designation: W24

Culture col. no.: DSM 19336, CGMCC 1.6501

Strain history: <- Xiaowei Wang; W24

NCBI tax ID(s): 407035 (species)

SI-ID 398658

DSM 19336

Section

Salinicoccus halodurans W24 is a mesophilic, Gram-positive, coccus-shaped bacterium that was isolated from saline soil sample around the Chaerhan salt lakes.

coccus-shaped
Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus halodurans**
	Full Scientific Name (LPSN)	Salinicoccus halodurans Wang et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32417]	Gram stain	positive

[Ref.: #32417]	Cell width	0.77 µm

[Ref.: #32417]	Cell shape	coccus-shaped

[Ref.: #32417]	Motility	no

[Ref.: #32417]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8053]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #8053]

Culture medium growth

[Ref.: #8053]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8053]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8053]	growth	28 °C
[Ref.: #32417]	growth	08-43 °C
[Ref.: #32417]	optimum	28 °C

[Ref.: #8053]	Temperature range	mesophilic
[Ref.: #32417]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32417]			optimum	7.5
[Ref.: #32417]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32417]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32417]		NaCl		growth	0-24	%
[Ref.: #32417]		NaCl		optimum	8	%

[Ref.: #8053]	Murein short key	A11.02
[Ref.: #8053]	Murein types	A3alpha L-Lys-Gly_5-6

[Ref.: #32417]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32417]	cellobiose ChEBI	+	carbon source
[Ref.: #32417]	esculin ChEBI	+	hydrolysis
[Ref.: #32417]	fructose ChEBI	+	carbon source
[Ref.: #32417]	glucose ChEBI	+	carbon source
[Ref.: #32417]	lactose ChEBI	+	carbon source
[Ref.: #32417]	maltose ChEBI	+	carbon source
[Ref.: #32417]	mannitol ChEBI	+	carbon source
[Ref.: #32417]	mannose ChEBI	+	carbon source
[Ref.: #32417]	nitrate ChEBI	+	reduction
[Ref.: #32417]	rhamnose ChEBI	+	carbon source
[Ref.: #32417]	sorbitol ChEBI	+	carbon source
[Ref.: #32417]	sucrose ChEBI	+	carbon source
[Ref.: #32417]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #32417]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #32417]	catalase	+	1.11.1.6
[Ref.: #32417]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32417]	gelatinase	+
[Ref.: #32417]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8053]	Sample type/isolated from	saline soil sample around the Chaerhan salt lakes
[Ref.: #8053]	Geographic location (country and/or sea, region)	Qinghai province
[Ref.: #8053]	Country	China
[Ref.: #8053]	Country ISO 3 Code	CHN
[Ref.: #8053]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ989633 (>99% sequence identity) for Salinicoccus from Microbeatlas

Aquatic Samples	92
Soil Samples	40
Animal Samples	262
Plant Samples	18
Total Samples	412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8053]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8053]	Salinicoccus halodurans strain W24 16S ribosomal RNA gene, partial sequence	DQ989633	1467	ENA	407035 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicoccus halodurans CGMCC 1.6501	GCA_900114445	scaffold	GenBank	407035 tax ID	*
[Ref.: #66792]	Salinicoccus halodurans strain CGMCC 1.6501	407035.5	wgs	PATRIC	407035 tax ID	*
[Ref.: #66792]	Salinicoccus halodurans CGMCC 1.6501	2687453789	draft	JGI IMG/M	407035 tax ID	*

[Ref.: #8053]	GC-content	45.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32417]	GC-content	45.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicoccus halodurans CGMCC 1.6501 NCBI: GCA_900114445.1
[Ref.: #69480]	motile	no	88.091	yes
[Ref.: #69480]	flagellated	no	89.358	yes
[Ref.: #69480]	gram-positive	yes	93.23	yes
[Ref.: #69480]	anaerobic	no	98.982	no
[Ref.: #69480]	aerobic	yes	96.133	no
[Ref.: #69480]	halophile	yes	97.188	yes
[Ref.: #69480]	spore-forming	no	88.672	no
[Ref.: #69480]	glucose-ferment	no	56.192	no
[Ref.: #69480]	thermophile	no	99.38	yes
[Ref.: #69480]	glucose-util	yes	88.835	yes

Availability in culture collections External links

[Ref.: #8053]

Culture collection no.

DSM 19336, CGMCC 1.6501

[Ref.: #83580]

SI-ID 398658

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus carnicancri sp. nov., a halophilic bacterium isolated from a Korean fermented seafood.	Jung MJ, Kim MS, Roh SW, Shin KS, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.012047-0	2009	*
Phylogeny	Salinicoccus halodurans sp. nov., a moderate halophile from saline soil in China.	Wang X, Xue Y, Yuan S, Zhou C, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65467-0	2008	*

References

#8053

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19336

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32417

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28640 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83580

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398658.1 )

#28640

IJSEM 1537 2008 ( DOI 10.1099/ijs.0.65467-0 , PubMed 18599690 )

* These data were automatically processed and therefore are not curated

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Salinicoccus halodurans CGMCC 1.6501

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