Name: Spiroplasma taiwanense CT-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14360

Type strain:

Species: Spiroplasma taiwanense

Strain Designation: CT-1

Culture col. no.: DSM 22604, ATCC 43302

Strain history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- D. L. Williamson <- L. Rosen; CT-1

NCBI tax ID(s): 1276220 (strain), 2145 (species)

SI-ID 41764

ATCC 43302

Section

Spiroplasma taiwanense CT-1 is a microaerophile, mesophilic bacterium that was isolated from female mosquitoes Culex tritaeniorhynchus.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Mycoplasmatota*
	Class	*Mollicutes*
	Order	*Mycoplasmatales*
	Family	*Spiroplasmataceae*
	Genus	*Spiroplasma*
	Species	**Spiroplasma taiwanense**
	Full Scientific Name (LPSN)	Spiroplasma taiwanense Abalain-Colloc et al. 1988

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16362]

Culture medium

SP4-Z MEDIUM (DSMZ Medium 1076b)

[Ref.: #16362]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16362]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16362]			growth	30 °C

[Ref.: #16362]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16362]

Oxygen tolerance

microaerophile

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	77.27	17 of 22
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	UDP-GlcNAc biosynthesis	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	photosynthesis	64.29	9 of 14
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	NAD metabolism	55.56	10 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	55.56	5 of 9
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	purine metabolism	47.87	45 of 94
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	oxidative phosphorylation	42.86	39 of 91
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	pyrimidine metabolism	42.22	19 of 45
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	methylglyoxal degradation	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	isoprenoid biosynthesis	34.62	9 of 26
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	serine metabolism	33.33	3 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	methionine metabolism	30.77	8 of 26
[Ref.: #66794]	Entner Doudoroff pathway	30	3 of 10
[Ref.: #66794]	non-pathway related	28.95	11 of 38
[Ref.: #66794]	tetrahydrofolate metabolism	28.57	4 of 14
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	28.57	2 of 7
[Ref.: #66794]	pentose phosphate pathway	27.27	3 of 11
[Ref.: #66794]	flavin biosynthesis	26.67	4 of 15
[Ref.: #66794]	lipid metabolism	25.81	8 of 31
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	degradation of sugar alcohols	25	4 of 16
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	butanoate fermentation	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	glutamate and glutamine metabolism	25	7 of 28
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	lipid A biosynthesis	22.22	2 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	22.22	2 of 9
[Ref.: #66794]	valine metabolism	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16362]	Sample type/isolated from	female mosquitoes Culex tritaeniorhynchus
[Ref.: #16362]	Host species	Culex tritaeniorhynchus
[Ref.: #16362]	Geographic location (country and/or sea, region)	Taishan (near Taipei)
[Ref.: #16362]	Country	Taiwan
[Ref.: #16362]	Country ISO 3 Code	TWN
[Ref.: #16362]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM037992 (>99% sequence identity) for Spiroplasma taiwanense subclade from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples	521
Plant Samples	1
Total Samples	523

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16362]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16362]	Spiroplasma taiwanense small subunit 16S ribosomal RNA, partial sequence	M24476	1467	ENA	1276220 tax ID
[Ref.: #20218]	Spiroplasma taiwanense ATCC:43302 16S ribosomal RNA gene, partial sequence	HM037992	1459	ENA	1276220 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spiroplasma taiwanense CT-1	GCA_000439435	complete	GenBank	1276220 tax ID	*
[Ref.: #66792]	Spiroplasma taiwanense CT-1	1276220.5	plasmid	PATRIC	1276220 tax ID	*
[Ref.: #66792]	Spiroplasma taiwanense CT-1	1276220.3	complete	PATRIC	1276220 tax ID	*
[Ref.: #66792]	Spiroplasma taiwanense CT-1	2561511192	complete	JGI IMG/M	1276220 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spiroplasma taiwanense CT-1 CT-1 NCBI: GCA_000439435.1
[Ref.: #69480]	motile	no	92.524	no
[Ref.: #69480]	flagellated	no	98.083	no
[Ref.: #69480]	gram-positive	yes	67.316	no
[Ref.: #69480]	anaerobic	no	94.962	yes
[Ref.: #69480]	aerobic	no	97.861	yes
[Ref.: #69480]	halophile	yes	65.743	no
[Ref.: #69480]	spore-forming	no	97.911	no
[Ref.: #69480]	glucose-util	yes	91.191	no
[Ref.: #69480]	thermophile	no	97.407	yes
[Ref.: #69480]	glucose-ferment	yes	79.51	no

Availability in culture collections External links

[Ref.: #16362]

Culture collection no.

DSM 22604, ATCC 43302

[Ref.: #83503]

SI-ID 41764

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of a cryptic extrachromosomal element isolated from the mollicute Spiroplasma taiwanense.	Gasparich GE, Hackett KJ	Plasmid	10.1006/plas.1994.1075	1994	*

References

#16362

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22604

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83503

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41764.1 )

* These data were automatically processed and therefore are not curated

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Spiroplasma taiwanense CT-1 CT-1

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