Name: Borrelia spielmanii PC-Eq17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14309

Type strain:

Species: Borrelia spielmanii

Strain Designation: PC-Eq17, PC-eq17N5

Culture col. no.: DSM 16813, CIP 108855

Strain history: CIP <- 2005, G. Baranton, Inst. Pasteur, Paris, France <- D. Richter, Berlin, Germany: strain PC-Eq17N5

NCBI tax ID(s): 88916 (species)

SI-ID 215498

DSM 16813, CIP 108855

Section

Borrelia spielmanii PC-Eq17 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Ixodes ricinus tick derived from host animal Eliomys quercinus.

Gram-negative
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Borreliaceae*
	Genus	*Borrelia*
	Species	**Borrelia spielmanii**
	Full Scientific Name (LPSN)	Borrelia spielmanii Richter et al. 2006

Synonym

Borreliella spielmanii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.855

[Ref.: #6612]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6612]

Culture medium

BSK-MEDIUM (DSMZ Medium 403)

[Ref.: #6612]

Culture medium growth

[Ref.: #6612]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6612]

Culture medium composition

expand / minimize

[Ref.: #38340]

Culture medium

MEDIUM 83 - for Borrelia

[Ref.: #38340]

Culture medium growth

[Ref.: #38340]

Culture medium composition

expand / minimize

[Ref.: #123261]

Culture medium

CIP Medium 83

[Ref.: #123261]

Culture medium growth

[Ref.: #123261]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #6612]			growth	32 °C
[Ref.: #38340]			growth	30 °C

[Ref.: #6612]	Temperature range	mesophilic
[Ref.: #38340]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6612]

Oxygen tolerance

microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6612]	Sample type/isolated from	Ixodes ricinus tick derived from host animal Eliomys quercinus
[Ref.: #6612]	Host species	Ixodes ricinus;Eliomys quercinus
[Ref.: #6612]	Geographic location (country and/or sea, region)	Petite Camargue Alsacienne
[Ref.: #6612]	Country	France
[Ref.: #6612]	Country ISO 3 Code	FRA
[Ref.: #6612]	Continent	Europe

[Ref.: #123261]	Sample type/isolated from	Animal, Ixodes ricinus tick feeding on a garden dormouse
[Ref.: #123261]	Geographic location (country and/or sea, region)	Alsace
[Ref.: #123261]	Country	France
[Ref.: #123261]	Country ISO 3 Code	FRA
[Ref.: #123261]	Continent	Europe
[Ref.: #123261]	Isolation date	2000
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Tick
#Host	#Mammals	#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY147008 (>99% sequence identity) for Borreliella from Microbeatlas

Aquatic Samples	31
Soil Samples	26
Animal Samples	197
Plant Samples
Total Samples	254

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6612]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #123261]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6612]	Borrelia spielmani 16S ribosomal RNA gene, partial sequence	AY147008	1213	ENA	88916 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Borreliella spielmanii DSM 16813	GCA_014201705	scaffold	GenBank	88916 tax ID	*
[Ref.: #66792]	Borreliella spielmanii strain DSM 16813	88916.9	wgs	PATRIC	88916 tax ID	*
[Ref.: #66792]	Borreliella spielmanii DSM 16813	2861251124	draft	JGI IMG/M	88916 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Borreliella spielmanii DSM 16813 NCBI: GCA_014201705.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Borreliella spielmanii DSM 16813 NCBI: GCA_014201705.1
[Ref.: #69480]	flagellated	no	88.123	no
[Ref.: #69480]	gram-positive	no	93.549	no
[Ref.: #69480]	anaerobic	no	92.044	yes
[Ref.: #69480]	aerobic	no	97.563	no
[Ref.: #69480]	halophile	yes	63.885	no
[Ref.: #69480]	spore-forming	no	97.585	no
[Ref.: #69480]	glucose-util	yes	78.513	no
[Ref.: #69480]	thermophile	no	86.673	yes
[Ref.: #69480]	motile	yes	88.057	no
[Ref.: #69480]	glucose-ferment	yes	68.038	no

Availability in culture collections External links

[Ref.: #6612]

Culture collection no.

DSM 16813, CIP 108855

[Ref.: #83462]

SI-ID 215498

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Human pathogenic Borrelia spielmanii sp. nov. resists complement-mediated killing by direct binding of immune regulators factor H and factor H-like protein 1.	Herzberger P, Siegel C, Skerka C, Fingerle V, Schulte-Spechtel U, van Dam A, Wilske B, Brade V, Zipfel PF, Wallich R, Kraiczy P	Infect Immun	10.1128/IAI.00532-07	2007	*
Phylogeny	Delineation of Borrelia burgdorferi sensu lato species by multilocus sequence analysis and confirmation of the delineation of Borrelia spielmanii sp. nov.	Richter D, Postic D, Sertour N, Livey I, Matuschka FR, Baranton G	Int J Syst Evol Microbiol	10.1099/ijs.0.64050-0	2006	*

References

#6612

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16813

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38340 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83462

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215498.1 )

#123261 Collection of Institut Pasteur ; Curators of the CIP; CIP 108855
* These data were automatically processed and therefore are not curated

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Borreliella spielmanii DSM 16813

Borreliella spielmanii DSM 16813

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