Name: Borrelia garinii 20047
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14307

Type strain:

Species: Borrelia garinii

Strain Designation: 20047

Culture col. no.: DSM 10534, ATCC 51383, CIP 103362

Strain history: <- CIP; CIP 103362 <- G. Baranton; 20047 <- C. Anderson;

NCBI tax ID(s): 29519 (species)

SI-ID 42962

ATCC 51383, CIP 103362, DSM 10534, BCRC 17175, CCRC 17175

Section

Borrelia garinii 20047 is a microaerophile, mesophilic bacterium that was isolated from Ixodes ricinus.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Borreliaceae*
	Genus	*Borrelia*
	Species	**Borrelia garinii**
	Full Scientific Name (LPSN)	Borrelia garinii Baranton et al. 1992

Synonym

Borreliella garinii

Information on morphological and physiological properties Morphology

[Ref.: #3969]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3969]

Culture medium

BSK-MEDIUM (DSMZ Medium 403)

[Ref.: #3969]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #3969]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3969]			growth	37 °C

[Ref.: #3969]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3969]

Oxygen tolerance

microaerophile

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3969]	Sample type/isolated from	Ixodes ricinus
[Ref.: #3969]	Host species	Ixodes ricinus
[Ref.: #3969]	Country	France
[Ref.: #3969]	Country ISO 3 Code	FRA
[Ref.: #3969]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Tick

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence D67018 (>99% sequence identity) for Borreliella from Microbeatlas

Aquatic Samples	378
Soil Samples	126
Animal Samples	1133
Plant Samples	40
Total Samples	1677

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3969]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3969]	Borrelia garinii DNA for 16S ribosomal RNA	D67018	1367	ENA	29519 tax ID
[Ref.: #20218]	Borrelia garinii strain 20047 16S small subunit ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ala and tRNA-Ile genes, complete sequence; methylpurine-DNA glycosylase (mag) and hydrolase (cof) genes, complete cds; and 23S large subunit ribosomal RNA gene, partial sequence	AY836549	5313	ENA	29519 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Borreliella garinii CIP 103362 20047	2728369389	complete	JGI IMG/M	29519 tax ID	*
[Ref.: #66792]	Borreliella garinii strain CIP 103362	29519.9	complete	PATRIC	29519 tax ID	*
[Ref.: #66792]	Borreliella garinii strain CIP 103362 strain 20047	29519.17	plasmid	PATRIC	29519 tax ID	*
[Ref.: #66792]	Borreliella garinii strain CIP 103362 strain 20047	29519.25	plasmid	PATRIC	29519 tax ID	*
[Ref.: #66792]	Borreliella garinii strain CIP 103362 strain 20047	29519.16	plasmid	PATRIC	29519 tax ID	*
[Ref.: #66792]	Borreliella garinii strain CIP 103362 strain 20047	29519.23	plasmid	PATRIC	29519 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Borreliella garinii CIP 103362 NCBI: GCA_001922545.1
[Ref.: #69480]	flagellated	no	88.11	no
[Ref.: #69480]	gram-positive	no	92.355	no
[Ref.: #69480]	anaerobic	no	93.461	yes
[Ref.: #69480]	aerobic	no	97.521	yes
[Ref.: #69480]	halophile	yes	65.814	no
[Ref.: #69480]	spore-forming	no	97.378	no
[Ref.: #69480]	thermophile	no	81.793	no
[Ref.: #69480]	glucose-util	yes	79.932	no
[Ref.: #69480]	motile	yes	89.341	no
[Ref.: #69480]	glucose-ferment	yes	69.092	no

Availability in culture collections External links

[Ref.: #3969]

Culture collection no.

DSM 10534, ATCC 51383, CIP 103362

[Ref.: #83460]

SI-ID 42962

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Genetics	Genomic and phenotypic characterization of Borrelia afzelii BO23 and Borrelia garinii CIP 103362.	Bontemps-Gallo S, Lawrence KA, Richards CL, Gherardini FC	PLoS One	10.1371/journal.pone.0199641	2018	*
Enzymology	[Evaluation of significance of Borrelia garinii spirochete recombinant protein DbpB for serodiagnostics of ixodes tick-borne borreliosis].	Karavaev VS, Riabchenko AV, Beklemishev AB	Zh Mikrobiol Epidemiol Immunobiol		2013	*
Pathogenicity	[Immunochemical analysis of recombinant protein FlaA of Western Siberian Borrelia garinii isolate].	Karavaev VS, Riabchenko AV, Beklemishev AB	Zh Mikrobiol Epidemiol Immunobiol		2011	*
Phylogeny	[Genetic variants of Borrelia garinii, a widely spread Eurasian pathogen of ixodic tick borreliosis].	Nefedova VV, Korenberg EI, Gorelova NB	Mol Gen Mikrobiol Virusol		2010	*
Pathogenicity	The tick Ixodes pavlovskyi as a host of spirochetes pathogenic for humans and its possible role in the epizootiology and epidemiology of borrelioses.	Korenberg EI, Nefedova VV, Romanenko VN, Gorelova NB	Vector Borne Zoonotic Dis	10.1089/vbz.2009.0033	2010	*
Phylogeny	Characterization of Borrelia burgdorferi sensu lato isolated in Moscow province--a sympatric region for Ixodes ricinus and Ixodes persulcatus.	Masuzawa T, Kharitonenkov IG, Kadosaka T, Hashimoto N, Kudeken M, Takada N, Kaneda K, Imai Y	Int J Med Microbiol	10.1016/j.ijmm.2004.09.008	2005	*
Pathogenicity	Terrestrial distribution of the Lyme borreliosis agent Borrelia burgdorferi sensu lato in East Asia.	Masuzawa T	Jpn J Infect Dis		2004	*
Genetics	[Use of western-immunoblotting to determine serum IgG-antibodies to antigens of different genotypes of Borrelia--Borrelia burgdorferi sensu stricto, Borrelia afzelii, and Borrelia garinii].	Anan'eva LP, Nasonova VA, Barskova VG, Stir AS	Med Parazitol (Mosk)		2002	*
Enzymology	Comprehensive detection of immunorelevant Borrelia garinii antigens by two-dimensional electrophoresis.	Jungblut PR, Grabher G, Stoffler G	Electrophoresis	10.1002/(SICI)1522-2683(19991201)20:18<3611::AID-ELPS3611>3.0.CO;2-4	1999	*
Phylogeny	Western blot analysis of sera from Lyme borreliosis patients according to the genomic species of the Borrelia strains used as antigens.	Assous MV, Postic D, Paul G, Nevot P, Baranton G	Eur J Clin Microbiol Infect Dis	10.1007/BF01967256	1993	*
	Prevalence of Borrelia burgdorferi sensu lato and Borrelia miyamotoi in ixodid ticks in the Far East of Russia.	Pukhovskaya NM, Morozova OV, Vysochina NP, Belozerova NB, Ivanov LI	Int J Parasitol Parasites Wildl	10.1016/j.ijppaw.2019.01.005	2019	*

References

#3969

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10534

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83460

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42962.1 )

* These data were automatically processed and therefore are not curated

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Borreliella garinii CIP 103362

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