Borrelia garinii subsp. garinii (DSM 10534, ATCC 51383, CIP 103362)

Name: Borrelia garinii subsp. garinii (DSM 10534, ATCC 51383, CIP 103362)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14307

Type strain

Strain Designation 20047

Culture col. no. DSM 10534 ATCC 51383 CIP 103362 20047

NCBI tax ID(s) 29519

Special Collections DSMZ CIP

History <- CIP; CIP 103362 <- G. Baranton; 20047 <- C. Anderson;

Links

Borrelia garinii subsp. garinii 20047 is a microaerophile bacterium that was isolated from Ixodes ricinus.

microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42962

ATCC 51383,CIP 103362,DSM 10534,BCRC 17175,CCRC 17175

@ref 20215

Last LPSN update 2026-02-09 11:21:23

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Spirochaetales

Family Borreliaceae

Genus Borrelia

Species Borrelia garinii subsp. garinii

Full scientific name Borrelia garinii subsp. garinii (Baranton et al. 1992) Hördt et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	100

Colony morphology

3969

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3969	BSK-MEDIUM (DSMZ Medium 403)		Medium recipe at MediaDive	Name: BSK-MEDIUM (DSMZ Medium 403) Composition: Bovine serum albumin 35.0245 g/l Gelatine 9.79706 g/l HEPES buffer 4.19874 g/l Proteose peptone no. 2 3.49895 g/l Glucose 2.09937 g/l Proteose yeastolate 0.69979 g/l Tryptone peptone 0.69979 g/l Na-pyruvate 0.559832 g/l Sodium citrate 0.489853 g/l N-Acetylglucosamine 0.279916 g/l MgCl2 x 6 H2O 0.209937 g/l L-Glutamine 0.069979 g/l Double distilled water CMRL 1066 Rabbit serum

Culture temp

@ref	Growth	Type	Temperature (°C)
3969	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
3969	microaerophile
125439	facultative anaerobe	99.2

Spore formation

@ref	Spore formation	Confidence
125439		100
125438		95.364

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Tick

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
3969	Ixodes ricinus	Ixodes ricinus	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence D67018 (>99% sequence identity) for Borreliella from Microbeatlas

Aquatic Samples	378
Soil Samples	126
Animal Samples	1133
Plant Samples	40
Total Samples	1677

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3969	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
124043	ASM4073296v1 assembly for Borreliella garinii CIP 103362	complete	GCA_040732965		29519	98.88
66792	ASM192254v1 assembly for Borreliella garinii CIP 103362	complete	GCA_001922545	2728369389	29519	94.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Borrelia garinii strain 20047 16S small subunit ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, tRNA-Ala and tRNA-Ile genes, complete sequence; methylpurine-DNA glycosylase (mag) and hydrolase (cof) genes, complete cds; and 23S large subunit ribosomal RNA gene, partial sequence	AY836549	5313		29519
3969	Borrelia garinii DNA for 16S ribosomal RNA	D67018	1367		29519

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Borreliella garinii strain CIP 103362
PATRIC: 29519.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	100.00	no
125439	motility	BacteriaNetⓘ	yes	66.80	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Borreliella garinii CIP 103362
NCBI: GCA_001922545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	80.62	no
125438	anaerobic	anaerobicⓘ	no	81.72	yes
125438	aerobic	aerobicⓘ	no	94.33	yes
125438	spore-forming	spore-formingⓘ	no	95.36	no
125438	thermophilic	thermophileⓘ	no	88.75	yes
125438	flagellated	motile2+ⓘ	no	50.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Combining citizen science and molecular diagnostic methods to investigate the prevalence of Borrelia burgdorferi s.l. and Borrelia miyamotoi in tick pools across Great Britain.	Shan J, Jia Y, Hickenbotham P, Teulieres L, Clokie MRJ.	Front Microbiol	10.3389/fmicb.2023.1126498	2023
Phylogeny	The genus Borrelia reloaded.	Margos G, Gofton A, Wibberg D, Dangel A, Marosevic D, Loh SM, Oskam C, Fingerle V.	PLoS One	10.1371/journal.pone.0208432	2018
	Targeting Multicopy Prophage Genes for the Increased Detection of Borrelia burgdorferi Sensu Lato (s.l.), the Causative Agents of Lyme Disease, in Blood.	Shan J, Jia Y, Teulieres L, Patel F, Clokie MRJ.	Front Microbiol	10.3389/fmicb.2021.651217	2021
	Detection of Borrelia burgdorferi antigens in tissues and plasma during early infection in a mouse model.	Dolange V, Simon S, Morel N.	Sci Rep	10.1038/s41598-021-96861-z	2021
	The Emerging Role of Microbial Biofilm in Lyme Neuroborreliosis.	Di Domenico EG, Cavallo I, Bordignon V, D'Agosto G, Pontone M, Trento E, Gallo MT, Prignano G, Pimpinelli F, Toma L, Ensoli F.	Front Neurol	10.3389/fneur.2018.01048	2018
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
	Prevalence of Borrelia burgdorferi sensu lato and Borrelia miyamotoi in ixodid ticks in the Far East of Russia.	Pukhovskaya NM, Morozova OV, Vysochina NP, Belozerova NB, Ivanov LI	Int J Parasitol Parasites Wildl	10.1016/j.ijppaw.2019.01.005	2019
Genetics	Genomic and phenotypic characterization of Borrelia afzelii BO23 and Borrelia garinii CIP 103362.	Bontemps-Gallo S, Lawrence KA, Richards CL, Gherardini FC	PLoS One	10.1371/journal.pone.0199641	2018
Enzymology	[Evaluation of significance of Borrelia garinii spirochete recombinant protein DbpB for serodiagnostics of ixodes tick-borne borreliosis].	Karavaev VS, Riabchenko AV, Beklemishev AB	Zh Mikrobiol Epidemiol Immunobiol		2013
Pathogenicity	[Immunochemical analysis of recombinant protein FlaA of Western Siberian Borrelia garinii isolate].	Karavaev VS, Riabchenko AV, Beklemishev AB	Zh Mikrobiol Epidemiol Immunobiol		2011
Phylogeny	[Genetic variants of Borrelia garinii, a widely spread Eurasian pathogen of ixodic tick borreliosis].	Nefedova VV, Korenberg EI, Gorelova NB	Mol Gen Mikrobiol Virusol		2010
Pathogenicity	The tick Ixodes pavlovskyi as a host of spirochetes pathogenic for humans and its possible role in the epizootiology and epidemiology of borrelioses.	Korenberg EI, Nefedova VV, Romanenko VN, Gorelova NB	Vector Borne Zoonotic Dis	10.1089/vbz.2009.0033	2010
Phylogeny	Characterization of Borrelia burgdorferi sensu lato isolated in Moscow province--a sympatric region for Ixodes ricinus and Ixodes persulcatus.	Masuzawa T, Kharitonenkov IG, Kadosaka T, Hashimoto N, Kudeken M, Takada N, Kaneda K, Imai Y	Int J Med Microbiol	10.1016/j.ijmm.2004.09.008	2005
Pathogenicity	Terrestrial distribution of the Lyme borreliosis agent Borrelia burgdorferi sensu lato in East Asia.	Masuzawa T	Jpn J Infect Dis		2004
Genetics	[Use of western-immunoblotting to determine serum IgG-antibodies to antigens of different genotypes of Borrelia--Borrelia burgdorferi sensu stricto, Borrelia afzelii, and Borrelia garinii].	Anan'eva LP, Nasonova VA, Barskova VG, Stir AS	Med Parazitol (Mosk)		2002
Enzymology	Comprehensive detection of immunorelevant Borrelia garinii antigens by two-dimensional electrophoresis.	Jungblut PR, Grabher G, Stoffler G	Electrophoresis	10.1002/(SICI)1522-2683(19991201)20:18<3611::AID-ELPS3611>3.0.CO;2-4	1999
Phylogeny	Western blot analysis of sera from Lyme borreliosis patients according to the genomic species of the Borrelia strains used as antigens.	Assous MV, Postic D, Paul G, Nevot P, Baranton G	Eur J Clin Microbiol Infect Dis	10.1007/BF01967256	1993

References

#3969	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10534
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Borrelia garinii subsp. garinii (DSM 10534, ATCC 51383, CIP 103362)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_040732965

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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