Name: Novosphingobium resinovorum KF3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14160

Type strain:

Species: Novosphingobium resinovorum

Strain Designation: KF3

Culture col. no.: DSM 10699

Strain history: <- L. Nohynek; KF3 <- R. Herwig, University Washington, Seattle, USA

NCBI tax ID(s): 158500 (species)

Special Collections

DSMZ

Other strains from Novosphingobium resinovorum

Section

Novosphingobium resinovorum KF3 is a bacterium that was isolated from groundwater and activated sludge.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium resinovorum**
	Full Scientific Name (LPSN)	Novosphingobium resinovorum (Delaporte and Daste 1956) Lim et al. 2007

	Synonym	Flavobacterium resinovorum
	Synonym	Sphingomonas subarctica
	Synonym	Novosphingobium subarcticum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4042]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4042]

Culture medium growth

[Ref.: #4042]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4042]

Culture medium composition

expand / minimize

[Ref.: #4042]

Culture medium

MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)

[Ref.: #4042]

Culture medium growth

[Ref.: #4042]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4042]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4042]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4042]	23186	-	-	-	-	-	+	-	+	+	+	-	-	+	+	-	-	-	+	+	-	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4042]	Sample type/isolated from	groundwater and activated sludge
[Ref.: #4042]	Country	USA
[Ref.: #4042]	Country ISO 3 Code	USA
[Ref.: #4042]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Environmental	#Aquatic	#Groundwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X94103 (>99% sequence identity) for Novosphingobium resinovorum subclade from Microbeatlas

Aquatic Samples	131
Soil Samples	47
Animal Samples	176
Plant Samples	36
Total Samples	390

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4042]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4042]	S.subarctica 16S ribosomal RNA (strain KF3)	X94103	1432	GenBank ENA	158500 tax ID
[Ref.: #20218]	Novosphingobium subarcticum 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and tRNA-Ile gene, partial sequence	AY231637	479	GenBank ENA	158500 tax ID	*

Availability in culture collections External links

[Ref.: #4042]

Culture collection no.

DSM 10699

References

#4042

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10699

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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