Name: Novosphingobium taihuense T3-B9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14155

Type strain:

Species: Novosphingobium taihuense

Strain Designation: T3-B9

Culture col. no.: DSM 17507, AS 1.3432, JCM 12465, CCUG 56308, BCRC 80740, CGMCC 1.3432, CIP 108789

Strain history: CIP <- 2005, JCM <- 2004, Y. Zhou: strain T3-B9

NCBI tax ID(s): 260085 (species)

SI-ID 138993

AS 1.3432, JCM 12465, CIP 108789, DSM 17507, CCUG 56308

Special Collections

Section

When using BacDive for research please cite our paper

Novosphingobium taihuense T3-B9 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from lake sediment.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium taihuense**
	Full Scientific Name (LPSN)	Novosphingobium taihuense Liu et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31399]	Gram stain	negative
[Ref.: #123416]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %95.4
[Ref.: #125438]	Gram stain	negative Confidence in %97.463

[Ref.: #31399]	Cell length	2.9 µm

[Ref.: #31399]	Cell width	0.45 µm

[Ref.: #31399]	Cell shape	rod-shaped
[Ref.: #123416]	Cell shape	rod-shaped

[Ref.: #31399]	Motility	no
[Ref.: #123416]	Motility	no

[Ref.: #31399]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7029]

Culture medium

MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)

[Ref.: #7029]

Culture medium growth

[Ref.: #7029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7029]

Culture medium composition

expand / minimize

[Ref.: #7029]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7029]

Culture medium growth

[Ref.: #7029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7029]

Culture medium composition

expand / minimize

[Ref.: #38312]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38312]

Culture medium growth

[Ref.: #38312]

Culture medium composition

expand / minimize

[Ref.: #123416]

Culture medium

CIP Medium 72

[Ref.: #123416]

Culture medium growth

[Ref.: #123416]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123416]

Culture medium

CIP Medium 368

[Ref.: #123416]

Culture medium growth

[Ref.: #123416]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7029]		growth	30 °C
[Ref.: #31399]		growth	10-37 °C
[Ref.: #31399]		optimum	25 °C
[Ref.: #38312]		growth	30 °C
[Ref.: #60911]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #123416]		growth	10-37 °C
[Ref.: #123416]	negative	growth	5 °C
[Ref.: #123416]	negative	growth	41 °C

	pH	Kind of pH		pH
[Ref.: #31399]			optimum	6
[Ref.: #31399]			growth	4.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31399]	Oxygen tolerance	aerobe
[Ref.: #60911]	Oxygen tolerance	aerobe
[Ref.: #123416]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.5

[Ref.: #31399]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %94.5
[Ref.: #125438]	Ability of spore formation	no Confidence in %93.322

	Salt		Salt conc.
[Ref.: #31399]	NaCl	growth	0-2	%
[Ref.: #31399]	NaCl	optimum	0.5	%
[Ref.: #123416]	NaCl	growth	0-10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31399]	alanine ChEBI	+	carbon source
[Ref.: #68372]	amygdalin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	arabinose ChEBI	+	carbon source
[Ref.: #68372]	arbutin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #31399]	cellobiose ChEBI	+	carbon source
[Ref.: #68372]	cellobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #123416]	citrate ChEBI	-	carbon source
[Ref.: #68372]	D-arabinose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fructose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-galactose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-glucose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-lyxose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-mannose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	D-ribose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-tagatose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	D-xylose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	erythritol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	esculin ChEBI	+	hydrolysis
[Ref.: #123416]	esculin ChEBI	+	hydrolysis
[Ref.: #68372]	esculin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #31399]	fructose ChEBI	+	carbon source
[Ref.: #68372]	galactitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	gentiobiose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	gluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	glucose ChEBI	+	carbon source
[Ref.: #68372]	glycerol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	glycogen ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	inulin ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-arabitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-fucose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-rhamnose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	L-sorbose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	L-xylose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	lactose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	maltose ChEBI	+	carbon source
[Ref.: #68372]	maltose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #31399]	mannose ChEBI	+	carbon source
[Ref.: #68372]	melezitose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	melibiose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-glucopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl alpha-D-mannoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	methyl beta-D-xylopyranoside ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	myo-inositol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	N-acetylglucosamine ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	nitrate ChEBI	+	reduction
[Ref.: #123416]	nitrate ChEBI	+	reduction
[Ref.: #123416]	nitrate ChEBI	+	respiration
[Ref.: #123416]	nitrite ChEBI	-	reduction
[Ref.: #68372]	Potassium 2-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	Potassium 5-ketogluconate ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	proline ChEBI	+	carbon source
[Ref.: #68372]	raffinose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #31399]	rhamnose ChEBI	+	carbon source
[Ref.: #68372]	ribitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	salicin ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	sorbitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	starch ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #31399]	sucrose ChEBI	+	carbon source
[Ref.: #68372]	sucrose ChEBI	+	assimilation	* from API 50CH assim
[Ref.: #68372]	trehalose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	turanose ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #68372]	xylitol ChEBI	-	assimilation	* from API 50CH assim
[Ref.: #31399]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123416]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123416]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123416]	amylase	+
[Ref.: #123416]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #123416]	caseinase	+	3.4.21.50
[Ref.: #31399]	catalase	+	1.11.1.6
[Ref.: #123416]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #123416]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123416]	gelatinase	-
[Ref.: #123416]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123416]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123416]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123416]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123416]	oxidase	+
[Ref.: #123416]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123416]	tryptophan deaminase	-
[Ref.: #123416]	tween esterase	+
[Ref.: #123416]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #7029]	116	-	-	-	-	+	-	+	-	-	-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	+	+	+	+	+	-	-	+	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123416]	2910	not determinedn.d.	+	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	+	+	-	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	+	+	+	+	-	+	-	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123416]	11459	-	+	+	+	-	+	+	-	+	-	+	+	+	+	+	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7029]	Sample type/isolated from	lake sediment
[Ref.: #7029]	Geographic location (country and/or sea, region)	Taihu Lake
[Ref.: #7029]	Country	China
[Ref.: #7029]	Country ISO 3 Code	CHN
[Ref.: #7029]	Continent	Asia

[Ref.: #60911]	Sample type/isolated from	Lake sediment
[Ref.: #60911]	Country	China
[Ref.: #60911]	Country ISO 3 Code	CHN
[Ref.: #60911]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment of Taihu Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jiangsu Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #123416]	Sample type/isolated from	Environment, Sediment
[Ref.: #123416]	Geographic location (country and/or sea, region)	Taihu lake
[Ref.: #123416]	Country	China
[Ref.: #123416]	Country ISO 3 Code	CHN
[Ref.: #123416]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7029]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123416]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7029]	Novosphingobium taihuense strain T3-B9 16S ribosomal RNA gene, partial sequence	AY500142	1374	GenBank ENA	260085 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Novosphingobium taihuense DSM 17507	GCA_014199635	scaffold	GenBank ENA	260085 tax ID	*
[Ref.: #66792]	Novosphingobium taihuense CGMCC 1.3432	GCA_007830315	contig	GenBank ENA	260085 tax ID	*
[Ref.: #66792]	Novosphingobium taihuense strain CGMCC 1.3432	260085.3	wgs	PATRIC	260085 tax ID	*
[Ref.: #66792]	Novosphingobium taihuense strain DSM 17507	260085.4	wgs	PATRIC	260085 tax ID	*
[Ref.: #66792]	Novosphingobium taihuense DSM 17507	2828632817	draft	JGI IMG/M	260085 tax ID	*
[Ref.: #66792]	Novosphingobium taihuense CGMCC 1.3432	2596583548	draft	JGI IMG/M	260085 tax ID	*

[Ref.: #31399]	GC-content	63.3 mol%
[Ref.: #67770]	GC-content	63.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Novosphingobium taihuense DSM 17507 NCBI: GCA_014199635.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.463	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.935	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	88.948	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	93.322	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.583	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	63.448	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Novosphingobium taihuense DSM 17507 NCBI: GCA_014199635
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	94.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	66.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	95.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.5

Availability in culture collections External links

[Ref.: #7029]

Culture collection no.

DSM 17507, AS 1.3432, JCM 12465, CCUG 56308, BCRC 80740, CGMCC 1.3432, CIP 108789

[Ref.: #83321]

SI-ID 138993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium bradum sp. nov., isolated from a spring.	Sheu SY, Liu LP, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001475	2016	*
Phylogeny	Novosphingobium fuchskuhlense sp. nov., isolated from the north-east basin of Lake Grosse Fuchskuhle.	Glaeser SP, Bolte K, Martin K, Busse HJ, Grossart HP, Kampfer P, Glaeser J	Int J Syst Evol Microbiol	10.1099/ijs.0.043083-0	2012	*
Phylogeny	Novosphingobium taihuense sp. nov., a novel aromatic-compound-degrading bacterium isolated from Taihu Lake, China.	Liu ZP, Wang BJ, Liu YH, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.63468-0	2005	*

References

#7029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31399

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27708 (see below)

#38312 ; Curators of the CIP;
#60911 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56308

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68372

Automatically annotated from API 50CH assim .

#68382

Automatically annotated from API zym .

#83321

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138993.1 )

#123416 Collection of Institut Pasteur ; Curators of the CIP; CIP 108789

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27708

IJSEM 1229 2005 ( DOI 10.1099/ijs.0.63468-0 , PubMed 15879260 )

* These data were automatically processed and therefore are not curated

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Novosphingobium taihuense DSM 17507

Novosphingobium taihuense DSM 17507

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