Novosphingobium subterraneum B0478 | Type strain | DSM 12447, CIP 105153, IFO 16086, NBRC 16086, SMCC B0478

Strain identifier

BacDive ID: 14149

Type strain:

Species: Novosphingobium subterraneum

Strain Designation: B0478

Culture col. no.: DSM 12447, CIP 105153, IFO 16086, NBRC 16086, SMCC B0478

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	31-03-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Sphingomonadales
	Family	Sphingomonadaceae
	Genus	Novosphingobium
	Species	Novosphingobium subterraneum
	Full Scientific Name (PNU)	Novosphingobium subterraneum corrig. (Balkwill et al. 1997) Takeuchi et al. 2001

	Synonym	Sphingomonas subterranea
	Synonym	Novosphingobium suterraneae
	Synonym	Novosphingobium subterraneae

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #4723]

Culture medium

PLATE COUNT AGAR (DSMZ Medium 464), 30°C

[Ref.: #4723]

Culture medium growth

[Ref.: #4723]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #4723]

Culture medium

MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457), 30°C, with toluene via incubation atmosphere

[Ref.: #4723]

Culture medium growth

[Ref.: #4723]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41532]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41532]

Culture medium growth

[Ref.: #41532]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4723]			growth	30 ̊C
[Ref.: #41532]			growth	25 ̊C

[Ref.: #4723]	Temperature range	mesophilic
[Ref.: #41532]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #4723]

Sample type/isolated from

subsurface core at 180 m depth

[Ref.: #4723]

Geographic location (country and/or sea, region)

S.C., Allendale

[Ref.: #4723]

Country

USA

[Ref.: #4723]

Country ISO 3 Code

USA

[Ref.: #4723]

Continent

North America

Isolation sources categories

#Environmental

#Terrestrial

#Core sample

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #4723]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #4723]

GC-content

60.0 mol%

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 16S rRNA, complete sequence	AB025014 ENA	16S	1446	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Gordonia rhizosphera gyrB gene for DNA gyrase subunit B, partial cds	AB075552 ENA		1263	1108045 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 30S ribosomal protein S19, complete cds, strain: NBRC 16086T	AB675143 ENA		279	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 50S ribosomal protein L22, complete cds, strain: NBRC 16086T	AB675144 ENA		378	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 50S ribosomal protein L29, complete cds, strain: NBRC 16086T	AB675145 ENA		204	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 30S ribosomal protein S17, complete cds, strain: NBRC 16086T	AB675146 ENA		270	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 50S ribosomal protein L24, complete cds, strain: NBRC 16086T	AB675147 ENA		318	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 30S ribosomal protein S14, complete cds, strain: NBRC 16086T	AB675148 ENA		306	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 30S ribosomal protein S08, complete cds, strain: NBRC 16086T	AB675149 ENA		396	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 50S ribosomal protein L18, complete cds, strain: NBRC 16086T	AB675150 ENA		351	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 50S ribosomal protein L30, complete cds, strain: NBRC 16086T	AB675151 ENA		177	48936 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Novosphingobium subterraneum gene for 16S rRNA, partial sequence, strain: NBRC 16086	AB681046 ENA	16S	1410	48936 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Novosphingobium subterraneae tRNA-Ile gene, tRNA-Ala gene and internal transcribed spacer (ITS), strain SMCC B0478, clone 1	AJ439418 ENA		979	48936 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Novosphingobium subterraneae tRNA-Ile gene, tRNA-Ala gene and internal transcribed spacer (ITS), strain SMCC B0478, clone 2	AJ439419 ENA		979	48936 tax ID	*
[Ref.: #4723]	Marker Gene (GenBank Direct submission)	Sphingomonas subterraneae SMCC B0478 16S small subunit rRNA gene, partial sequence	U20773 ENA	16S	1417	48936 tax ID

Availability in culture collectionsStrain availability

[Ref.: #4723]

Culture collection no.

DSM 12447, CIP 105153, IFO 16086, NBRC 16086, SMCC B0478

[Ref.: #4723]	Strain history	<- D.L. Balkwill <- J.K. Fredrickson; B0478
[Ref.: #41532]	Strain history	1997, D. L. Balkwill, Florida State Univ., Tallahassee, FL, USA: strain SMCC B0478

[Ref.: #20218]

Associated Passport(s) in StrainInfo

44790, 44789, 211479, 487345, 117784

References

#4723

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12447

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41532 ; Curators of the CIP;
* These References are textmined

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