Name: Roseomonas hibiscisoli THG-N2.22
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141000

Type strain:

Species: Roseomonas hibiscisoli

Strain Designation: THG-N2.22

Culture col. no.: KACC 18935, CCTCC AB 2016176

NCBI tax ID(s): 2027873 (species)

Section

Roseomonas hibiscisoli THG-N2.22 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from rhizosphere of Mugunghwa , Kyung Hee University, Yongin, South Korea.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas hibiscisoli**
	Full Scientific Name (LPSN)	Roseomonas hibiscisoli Yan et al. 2017

Synonym

Pseudoroseomonas hibiscisoli

Information on morphological and physiological properties Morphology

[Ref.: #43886]	Gram stain	negative

[Ref.: #43886]	Cell length	0.8 µm
[Ref.: #43886]	Cell length	1.7-1.9 µm

[Ref.: #43886]	Cell width	0.8 µm
[Ref.: #43886]	Cell width	0.6-0.8 µm

[Ref.: #43886]	Cell shape	coccus-shaped
[Ref.: #43886]	Cell shape	rod-shaped

[Ref.: #43886]	Motility	no

[Ref.: #43886]	Colony size	2 mm
[Ref.: #43886]	Colony color	pink
[Ref.: #43886]	Colony shape	circular
[Ref.: #43886]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43886]			growth	20-40 °C
[Ref.: #43886]			optimum	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43886]			optimum	7
[Ref.: #43886]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43886]		NaCl		growth	0-4	%(w/v)
[Ref.: #43886]		NaCl		optimum	1	%(w/v)

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Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43886]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #43886]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43886]	3-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #43886]	4-hydroxybenzoate ChEBI	+	carbon source
[Ref.: #43886]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #43886]	adipate ChEBI	+	carbon source
[Ref.: #43886]	casein	-	hydrolysis
[Ref.: #43886]	cellulose ChEBI	+	hydrolysis
[Ref.: #43886]	chitin ChEBI	-	hydrolysis
[Ref.: #43886]	citrate ChEBI	+	carbon source
[Ref.: #43886]	D-glucose ChEBI	+	carbon source
[Ref.: #43886]	D-mannitol ChEBI	+	carbon source
[Ref.: #43886]	D-mannose ChEBI	+	carbon source
[Ref.: #43886]	D-ribose ChEBI	+	carbon source
[Ref.: #43886]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43886]	decanoate ChEBI	-	carbon source
[Ref.: #43886]	dna ChEBI	+	hydrolysis
[Ref.: #43886]	gluconate ChEBI	-	carbon source
[Ref.: #43886]	glucose ChEBI	-	builds acid from
[Ref.: #43886]	glycogen ChEBI	-	carbon source
[Ref.: #43886]	itaconate ChEBI	+	carbon source
[Ref.: #43886]	L-alanine ChEBI	+	carbon source
[Ref.: #43886]	L-arabinose ChEBI	+	carbon source
[Ref.: #43886]	L-fucose ChEBI	+	carbon source
[Ref.: #43886]	L-histidine ChEBI	+	carbon source
[Ref.: #43886]	L-proline ChEBI	-	carbon source
[Ref.: #43886]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43886]	L-serine ChEBI	-	carbon source
[Ref.: #43886]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43886]	lactate ChEBI	+	carbon source
[Ref.: #43886]	malate ChEBI	+	carbon source
[Ref.: #43886]	maltose ChEBI	+	carbon source
[Ref.: #43886]	melibiose ChEBI	+	carbon source
[Ref.: #43886]	myo-inositol ChEBI	+	carbon source
[Ref.: #43886]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43886]	nitrate ChEBI	-	reduction
[Ref.: #43886]	phenylacetate ChEBI	-	carbon source
[Ref.: #43886]	propionate ChEBI	-	carbon source
[Ref.: #43886]	salicin ChEBI	+	carbon source
[Ref.: #43886]	sodium acetate ChEBI	+	carbon source
[Ref.: #43886]	sodium citrate ChEBI	+	carbon source
[Ref.: #43886]	sodium malonate ChEBI	+	carbon source
[Ref.: #43886]	starch ChEBI	-	hydrolysis
[Ref.: #43886]	suberic acid ChEBI	+	carbon source
[Ref.: #43886]	sucrose ChEBI	+	carbon source
[Ref.: #43886]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43886]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43886]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43886]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43886]	acid phosphatase	-	3.1.3.2
[Ref.: #43886]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43886]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43886]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43886]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43886]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43886]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43886]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43886]	beta-galactosidase	+	3.2.1.23
[Ref.: #43886]	beta-galactosidase	-	3.2.1.23
[Ref.: #43886]	beta-glucosidase	+	3.2.1.21
[Ref.: #43886]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43886]	catalase	+	1.11.1.6
[Ref.: #43886]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43886]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43886]	esterase (C 4)	+
[Ref.: #43886]	esterase Lipase (C 8)	+
[Ref.: #43886]	leucine arylamidase	-	3.4.11.1
[Ref.: #43886]	lipase (C 14)	+
[Ref.: #43886]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43886]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43886]	protease	+
[Ref.: #43886]	trypsin	+	3.4.21.4
[Ref.: #43886]	urease	+	3.5.1.5
[Ref.: #43886]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C18:1ω7c	51.9
C16:1ω7c / C16:1	14.3
C16:0	13.5
C18:1 2OH	6.7
C16:1ω5c	4.5
C18:0	2.1
C14:0	1.8
C16:0 3OH	1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43886]	Sample type/isolated from	rhizosphere of Mugunghwa (Hibiscus syriacus), Kyung Hee University, Yongin, South Korea
[Ref.: #43886]	Sampling date	2016-05-25
[Ref.: #43886]	Geographic location (country and/or sea, region)	Yongin
[Ref.: #43886]	Country	Republic of Korea
[Ref.: #43886]	Country ISO 3 Code	KOR
[Ref.: #43886]	Continent	Asia
[Ref.: #43886]	Geographic location	37.2758°/127.1780°
[Ref.: #43886]	Enrichment culture	Nutrient agar
[Ref.: #43886]	Enrichment culture duration	1 week
[Ref.: #43886]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX456186 (>99% sequence identity) for Roseomonas from Microbeatlas

Aquatic Samples	48
Soil Samples	28
Animal Samples	149
Plant Samples	55
Total Samples	280

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43886]	16S rRNA gene sequence	KX456186		GenBank

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GC-content

64.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

KACC 18935, CCTCC AB 2016176

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus).	Yan ZF, Lin P, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002036	2017	*
Phylogeny	Roseomonas vastitatis sp. nov. isolated from Badain Jaran desert in China.	Zhao LL, Deng Y, Sun Y, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003898	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43886

Zheng-Fei Yan, Pei Lin, Chang-Tian Li, MooChang Kook, Qi-Jun Wang, Tae-Hoo Yi: Roseomonas hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus). IJSEM 67: 2873 - 2878 2017 ( DOI 10.1099/ijsem.0.002036 , PubMed 28820105 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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