Name: Henriciella barbarensis LMG 28705
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140992

Type strain:

Species: Henriciella barbarensis

Culture col. no.: LMG 28705, CCUG 66934, MCS 23

NCBI tax ID(s): 86342 (species)

Section

Henriciella barbarensis LMG 28705 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from filtered seawater samples from Santa Barbara marine laboratory, Universitry of California.

colony-forming
Gram-negative
motile
aerobe
chemoorganotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Caulobacterales*
	Family	*Hyphomonadaceae*
	Genus	*Henriciella*
	Species	**Henriciella barbarensis**
	Full Scientific Name (LPSN)	Henriciella barbarensis Abraham et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43879]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43879]	Cell length	1.8 µm

[Ref.: #43879]	Cell width	0.3 µm

[Ref.: #43879]	Motility	yes

[Ref.: #43879]	Flagellum arrangement	polar

[Ref.: #43879]	Colony color	colourless
[Ref.: #43879]	Colony shape	circular

[Ref.: #63364]	Incubation period	2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43879]

Culture medium

Marine-Caulobacter-medium SPYEM

[Ref.: #43879]

Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #43879]

Culture medium

Peptone-yeast extract media

[Ref.: #43879]

Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #43879]	growth	15-40 °C
[Ref.: #43879]	optimum	20-40 °C
[Ref.: #63364]	growth	30 °C

[Ref.: #63364]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43879]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43879]	Oxygen tolerance	aerobe
[Ref.: #63364]	Oxygen tolerance	aerobe

[Ref.: #43879]

Nutrition type

chemoorganotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Salt	Tested relation		Salt conc.
[Ref.: #43879]	NaCl		optimum	20-80	g/L
[Ref.: #43879]	NaCl	no	growth	0-5	g/L
[Ref.: #43879]	NaCl		growth	5-80	g/L

[Ref.: #43879]

Observation

Multiplication by binary fission

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43879]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	hydrolysis
[Ref.: #43879]	arginine ChEBI	-	hydrolysis
[Ref.: #43879]	esculin ChEBI	-	hydrolysis
[Ref.: #43879]	gelatin ChEBI	-	hydrolysis
[Ref.: #43879]	nitrate ChEBI	-	reduction
[Ref.: #43879]	tryptophan ChEBI	-	oxidation
[Ref.: #43879]	urea ChEBI	-	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #43879]	acid phosphatase	+	3.1.3.2
[Ref.: #43879]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43879]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43879]	cystine arylamidase	+	3.4.11.3
[Ref.: #43879]	esterase (C 4)	+
[Ref.: #43879]	esterase Lipase (C 8)	+
[Ref.: #43879]	leucine arylamidase	+	3.4.11.1
[Ref.: #43879]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43879]	trypsin	+/-	3.4.21.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43879]	Sample type/isolated from	filtered seawater samples from Santa Barbara marine laboratory, Universitry of California
[Ref.: #43879]	Geographic location (country and/or sea, region)	Santa Barbara
[Ref.: #43879]	Country	USA
[Ref.: #43879]	Country ISO 3 Code	USA
[Ref.: #43879]	Continent	North America

[Ref.: #63364]	Sample type/isolated from	Filtered seawater
[Ref.: #63364]	Geographic location (country and/or sea, region)	University of California
[Ref.: #63364]	Country	USA
[Ref.: #63364]	Country ISO 3 Code	USA
[Ref.: #63364]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ227807 (>99% sequence identity) for Henriciella from Microbeatlas

Aquatic Samples	1366
Soil Samples	30
Animal Samples	59
Plant Samples	8
Total Samples	1463

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43879]	16S rRNA gene sequence	AJ227807		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Henriciella barbarensis CCUG66934	GCA_003576345	scaffold	GenBank	86342 tax ID	*
[Ref.: #66792]	Henriciella barbarensis strain CCUG66934	86342.3	wgs	PATRIC	86342 tax ID	*
[Ref.: #66792]	Henriciella barbarensis CCUG 66934	2831698200	draft	JGI IMG/M	86342 tax ID	*

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GC-content

57 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Henriciella barbarensis CCUG66934 NCBI: GCA_003576345.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Henriciella barbarensis CCUG66934 NCBI: GCA_003576345.1
[Ref.: #69480]	motile	yes	88.694	yes
[Ref.: #69480]	flagellated	no	71.329	yes
[Ref.: #69480]	gram-positive	no	98.869	yes
[Ref.: #69480]	anaerobic	no	98.036	no
[Ref.: #69480]	aerobic	yes	94.649	no
[Ref.: #69480]	halophile	no	62.902	no
[Ref.: #69480]	spore-forming	no	96.632	no
[Ref.: #69480]	glucose-util	yes	76.778	no
[Ref.: #69480]	thermophile	no	98.027	yes
[Ref.: #69480]	glucose-ferment	no	94.463	no

Availability in culture collections External links

[Ref.: #43879]

Culture collection no.

LMG 28705, CCUG 66934, MCS 23

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Physiological and genomic features of Henriciella with the description of Henriciella mobilis sp. nov.	Ren WT, Cheng H, Wang CS, Xu XW, Zhou P, Wu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004889	2021	*
Phylogeny	Proposal of Henriciella barbarensis sp. nov. and Henriciella algicola sp. nov., stalked species of the genus and emendation of the genus Henriciella.	Abraham WR, de Carvalho MP, da Costa Neves TSP, Memoria MT, Tartuci IT, Vancanneyt M, Smit J, Rohde M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002024	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43879

Wolf-Rainer Abraham, Maira Peres de Carvalho, Thais Souto Paula da Costa Neves, Marina Torquato Memoria, Iago Toledo Tartuci, Marc Vancanneyt, John Smit, Manfred Rohde: Proposal of Henriciella barbarensis sp. nov. and Henriciella algicola sp. nov., stalked species of the genus and emendation of the genus Henriciella. IJSEM 67: 2804 - 2810 2017 ( DOI 10.1099/ijsem.0.002024 , PubMed 28820095 )

#63364 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66934

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Henriciella barbarensis CCUG66934

Henriciella barbarensis CCUG66934

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