Henriciella barbarensis (LMG 28705, CCUG 66934, MCS 23)

Name: Henriciella barbarensis (LMG 28705, CCUG 66934, MCS 23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140992

Type strain

Culture col. no. LMG 28705 CCUG 66934 MCS 23

NCBI tax ID(s) 86342

Special Collections CCUG Literature strains

Henriciella barbarensis LMG 28705 is an aerobe, chemoorganotroph, Gram-negative prokaryote that forms circular colonies and was isolated from filtered seawater samples from Santa Barbara marine laboratory, Universitry of California.

Gram-negative motile colony-forming aerobe chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

Culture Collection Numbers

LMG 28705 CCUG 66934 MCS 23

@ref 20215

Last LPSN update 2025-12-16 10:03:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Hyphomonadaceae

Genus Henriciella

Species Henriciella barbarensis

Full scientific name Henriciella barbarensis Abraham et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Flagellum arrangement	Confidence
43879	negative	1.8 µm	0.3 µm	polar
125439	negative				98.9
125438	negative				98.802

Colony morphology

@ref	Colony color	Colony shape	Incubation period
43879	colourless	circular
63364			2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
43879	Marine-Caulobacter-medium SPYEM		30 g/L sea salts, 0.5 g/L NH4Cl, 20 ml/L 50xPYE (10% peptone, 5% yeast extract), 0.1% Glucose, 5 mL/L Riboflavin
43879	Peptone-yeast extract media		supplemented with 5-80 g/L NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43879	positive	growth	15-40
43879	positive	optimum	20-40
63364	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43879	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43879	aerobe
63364	aerobe
125439	aerobe	93.6

Nutrition type

43879

Typechemoorganotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.1
125438		91.301

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43879	NaCl	positive	optimum	20-80 g/L
43879	NaCl		growth	0-5 g/L
43879	NaCl	positive	growth	5-80 g/L

Observation

43879

ObservationMultiplication by binary fission

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43879	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	-	hydrolysis
43879	29016 ChEBI	arginine	-	hydrolysis
43879	4853 ChEBI	esculin	-	hydrolysis
43879	5291 ChEBI	gelatin	-	hydrolysis
43879	17632 ChEBI	nitrate	-	reduction
43879	27897 ChEBI	tryptophan	-	oxidation
43879	16199 ChEBI	urea	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
43879	acid phosphatase	+	3.1.3.2
43879	alkaline phosphatase	+	3.1.3.1
43879	alpha-glucosidase	+	3.2.1.20
43879	cystine arylamidase	+	3.4.11.3
43879	esterase (C 4)	+
43879	esterase Lipase (C 8)	+
43879	leucine arylamidase	+	3.4.11.1
43879	naphthol-AS-BI-phosphohydrolase	+
43879	trypsin	+/-	3.4.21.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
43879	filtered seawater samples from Santa Barbara marine laboratory, Universitry of California	Santa Barbara	USA	USA	North America
63364	Filtered seawater	University of California	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AJ227807 (>99% sequence identity) for Henriciella from Microbeatlas

Aquatic Samples	1366
Soil Samples	30
Animal Samples	59
Plant Samples	8
Total Samples	1463

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM357634v1 assembly for Henriciella barbarensis CCUG66934	scaffold	GCA_003576345	86342.3	2831698200	86342	76.08

16S sequences

@ref	Description	Accession	Database
43879	Henriciella sp. MCS23 DNA for 16S ribosomal RNA, strain MCS23	AJ227807

GC content

@ref	GC-content (mol%)	Method
43879	57	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Henriciella barbarensis CCUG66934
NCBI: GCA_003576345

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	72.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Henriciella barbarensis CCUG66934
NCBI: GCA_003576345.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.80	no
125438	anaerobic	anaerobicⓘ	no	93.45	yes
125438	aerobic	aerobicⓘ	yes	87.80	yes
125438	spore-forming	spore-formingⓘ	no	91.30	no
125438	thermophilic	thermophileⓘ	no	97.77	yes
125438	flagellated	motile2+ⓘ	yes	70.33	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Physiological and genomic features of Henriciella with the description of Henriciella mobilis sp. nov.	Ren WT, Cheng H, Wang CS, Xu XW, Zhou P, Wu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004889	2021
Phylogeny	Proposal of Henriciella barbarensis sp. nov. and Henriciella algicola sp. nov., stalked species of the genus and emendation of the genus Henriciella.	Abraham WR, de Carvalho MP, da Costa Neves TSP, Memoria MT, Tartuci IT, Vancanneyt M, Smit J, Rohde M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002024	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43879	Wolf-Rainer Abraham, Maira Peres de Carvalho, Thais Souto Paula da Costa Neves, Marina Torquato Memoria, Iago Toledo Tartuci, Marc Vancanneyt, John Smit, Manfred Rohde: Proposal of Henriciella barbarensis sp. nov. and Henriciella algicola sp. nov., stalked species of the genus and emendation of the genus Henriciella. IJSEM 67: 2804 - 2810 2017 ( DOI 10.1099/ijsem.0.002024 , PubMed 28820095 )
#63364	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66934
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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Henriciella barbarensis (LMG 28705, CCUG 66934, MCS 23)

Name and taxonomic classification

Culture Collection Numbers

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003576345

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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