Name: Paracoccus mangrovi gyp-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140973

Type strain:

Species: Paracoccus mangrovi

Strain Designation: gyp-1

Culture col. no.: BCRC 80920, LMG 29172, KCTC 42899

Strain history: <- Wen-Ming Chen, National Kaohsiung Marine Univ.

NCBI tax ID(s): 1715645 (species)

Section

Paracoccus mangrovi gyp-1 is an aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from root part of mangrove, Anping District, Tainan City, Taiwan.

coccus-shaped
colony-forming
Gram-negative
aerobe
chemoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus mangrovi**
	Full Scientific Name (LPSN)	Paracoccus mangrovi Chen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43865]	Gram stain	negative

[Ref.: #43865]	Cell length	0.5-0.7 µm

[Ref.: #43865]	Cell width	0.3-0.5 µm

[Ref.: #43865]	Cell shape	coccus-shaped
[Ref.: #43865]	Cell shape	rod-shaped

[Ref.: #43865]	Motility	no

[Ref.: #43865]	Colony size	0.4-0.6 mm
[Ref.: #43865]	Colony color	cream
[Ref.: #43865]	Colony shape	circular
[Ref.: #43865]	Incubation period	2 days
[Ref.: #43865]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43865]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43865]

Culture medium growth

[Ref.: #43865]

Culture medium

Marine agar (MA)

[Ref.: #43865]

Culture medium growth

[Ref.: #43865]

Culture medium

Nutrient agar (NA)

[Ref.: #43865]

Culture medium growth

[Ref.: #43865]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43865]

Culture medium growth

[Ref.: #43865]

Culture medium

Trypticase soy agar

[Ref.: #43865]

Culture medium growth

		Temperature
[Ref.: #43865]	growth	15-37 °C
[Ref.: #43865]	optimum	25-30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #43865]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43865]			optimum	6
[Ref.: #43865]			growth	5.5-7.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43865]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43865]

Nutrition type

chemoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43865]		NaCl		growth	0-4	%(w/v)
[Ref.: #43865]		NaCl		optimum	1-2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43865]	acetate ChEBI	-	growth
[Ref.: #43865]	adipate ChEBI	+	assimilation
[Ref.: #43865]	arabinose ChEBI	+	assimilation
[Ref.: #43865]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43865]	casein	+	hydrolysis
[Ref.: #43865]	cellobiose ChEBI	+	growth
[Ref.: #43865]	chitin ChEBI	-	hydrolysis
[Ref.: #43865]	citrate ChEBI	-	assimilation
[Ref.: #43865]	citrate ChEBI	-	growth
[Ref.: #43865]	corn oil	-	hydrolysis
[Ref.: #43865]	D-fructose ChEBI	+	growth
[Ref.: #43865]	D-galactose ChEBI	+	growth
[Ref.: #43865]	D-glucose ChEBI	+	growth
[Ref.: #43865]	D-mannitol ChEBI	+	growth
[Ref.: #43865]	D-mannose ChEBI	+	growth
[Ref.: #43865]	D-rhamnose ChEBI	+	growth
[Ref.: #43865]	D-sorbitol ChEBI	+	growth
[Ref.: #43865]	decanoate ChEBI	-	assimilation
[Ref.: #43865]	dna ChEBI	-	hydrolysis
[Ref.: #43865]	esculin ChEBI	+	hydrolysis
[Ref.: #43865]	gamma-cyclodextrin ChEBI	-	growth
[Ref.: #43865]	gelatin ChEBI	+	hydrolysis
[Ref.: #43865]	gluconate ChEBI	+	assimilation
[Ref.: #43865]	glucose ChEBI	-	fermentation
[Ref.: #43865]	glucose ChEBI	+	assimilation
[Ref.: #43865]	lecithin ChEBI	-	hydrolysis
[Ref.: #43865]	malate ChEBI	+	assimilation
[Ref.: #43865]	maltose ChEBI	+	assimilation
[Ref.: #43865]	maltose ChEBI	+	growth
[Ref.: #43865]	mannitol ChEBI	+	assimilation
[Ref.: #43865]	mannose ChEBI	+	assimilation
[Ref.: #43865]	methanol ChEBI	+	growth
[Ref.: #43865]	methylamine ChEBI	+	growth
[Ref.: #43865]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43865]	nitrate ChEBI	+	reduction
[Ref.: #43865]	phenylacetate ChEBI	-	assimilation
[Ref.: #43865]	raffinose ChEBI	+	growth
[Ref.: #43865]	ribitol ChEBI	+	growth
[Ref.: #43865]	starch ChEBI	-	hydrolysis
[Ref.: #43865]	sucrose ChEBI	+	growth
[Ref.: #43865]	trehalose ChEBI	+	growth
[Ref.: #43865]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43865]	tween 40 ChEBI	-	growth
[Ref.: #43865]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43865]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43865]	tween 80 ChEBI	+	growth
[Ref.: #43865]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43865]	urea ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43865]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43865]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43865]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43865]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #43865]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43865]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #43865]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #43865]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43865]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #43865]	tetracycline ChEBI	yes	30	µg (disc)

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic resistance	Concentration
[Ref.: #43865]		26	sulfamethoxazole ChEBI	yes	23.75	µg (disc)
[Ref.: #43865]		26	trimethoprim ChEBI	yes	1.25	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #43865]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43865]	acid phosphatase	+	3.1.3.2
[Ref.: #43865]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43865]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43865]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43865]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43865]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43865]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43865]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43865]	beta-galactosidase	-	3.2.1.23
[Ref.: #43865]	beta-galactosidase	+	3.2.1.23
[Ref.: #43865]	beta-glucosidase	+	3.2.1.21
[Ref.: #43865]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43865]	catalase	+	1.11.1.6
[Ref.: #43865]	cystine arylamidase	+	3.4.11.3
[Ref.: #43865]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43865]	esterase (C 4)	+
[Ref.: #43865]	esterase Lipase (C 8)	+
[Ref.: #43865]	leucine arylamidase	+	3.4.11.1
[Ref.: #43865]	lipase (C 14)	+
[Ref.: #43865]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43865]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43865]	trypsin	+	3.4.21.4
[Ref.: #43865]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43865]

Fatty acid	Percentage
C18:1ω7c	66.1
C16:0	17.3
C18:0	8.7
C10:0 3OH	2.2
C14:0 anteiso	1.1
C14:0 3-OH / C16:1 iso I	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43865]	Sample type/isolated from	root part of mangrove, Anping District, Tainan City, Taiwan
[Ref.: #43865]	Geographic location (country and/or sea, region)	Anping District, Tainan City
[Ref.: #43865]	Country	Taiwan
[Ref.: #43865]	Country ISO 3 Code	TWN
[Ref.: #43865]	Continent	Asia
[Ref.: #43865]	Geographic location	23.0050°/120.1570°
[Ref.: #43865]	Enrichment culture	R2A agar
[Ref.: #43865]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From Mangroves
[Ref.: #67771]	Geographic location (country and/or sea, region)	Tainan City
[Ref.: #67771]	Country	Taiwan
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43865]	16S rRNA gene sequence	LN879490		GenBank

[Ref.: #43865]

GC-content

64.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43865]

Culture collection no.

BCRC 80920, LMG 29172, KCTC 42899

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus mangrovi sp. nov., isolated from a mangrove.	Chen WM, Li YS, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001993	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43865

Wen-Ming Chen, Yi-Shu Li, Chiu-Chung Young, Shih-Yi Sheu: Paracoccus mangrovi sp. nov., isolated from a mangrove. IJSEM 67: 2689 - 2695 2017 ( DOI 10.1099/ijsem.0.001993 , PubMed 28809137 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paracoccus mangrovi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF