Bacillus tropicus N24 | Type strain | MCCC 1A01406, KCTC 33711, LMG 28874

Strain identifier

BacDive ID: 140962

Type strain:

Species: Bacillus tropicus

Strain Designation: N24

Culture col. no.: MCCC 1A01406, KCTC 33711, LMG 28874

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Bacillus tropicus N24 is a facultative anaerobe, spore-forming, gram-positive bacterium that forms circular colonies and was isolated from sediment of the South China Sea.

colony-forming
gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Bacilli
	Order	Caryophanales
	Family	Bacillaceae
	Genus	Bacillus
	Species	Bacillus tropicus
	Full Scientific Name (PNU)	Bacillus tropicus Liu et al. 2017

Information on morphological and physiological propertiesMorphology

[Ref.: #43860]	Gram stain	positive
[Ref.: #43860]	Cell length	2.2-2.6 µm
[Ref.: #43860]	Cell width	1.3-1.6 µm
[Ref.: #43860]	Cell shape	rod-shaped
[Ref.: #43860]	Motility	yes
[Ref.: #43860]	Flagellum arrangement	peritrichous

[Ref.: #43860]	Colony size	2-3 mm
[Ref.: #43860]	Colony color	off-white
[Ref.: #43860]	Colony shape	circular
[Ref.: #43860]	Incubation period	2 days
[Ref.: #43860]	Cultivation medium used	Luria-Bertani agar

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43860]

Culture medium growth

[Ref.: #43860]

Culture medium

Trypticase soy agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43860]			growth	15-45 ̊C
[Ref.: #43860]			optimum	30 ̊C

[Ref.: #43860]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43860]			optimum	6
[Ref.: #43860]			growth	5.0-9.0

Information on physiology and metabolismPhysiology and metabolism

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Oxygen tolerance

facultative anaerobe

[Ref.: #43860]	Spore description	central elliptical endospore
[Ref.: #43860]	Type of spore	endospore
[Ref.: #43860]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43860]		NaCl		growth	0-9	%(w/v)
[Ref.: #43860]		NaCl		optimum	0-0.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43860]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43860]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43860]	amygdalin ChEBI	-	builds acid from
[Ref.: #43860]	arabinose ChEBI	-	builds acid from
[Ref.: #43860]	arbutin ChEBI	-	builds acid from
[Ref.: #43860]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #43860]	casein	+	hydrolysis
[Ref.: #43860]	cellobiose ChEBI	+	builds acid from
[Ref.: #43860]	citrate ChEBI	+	carbon source
[Ref.: #43860]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43860]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43860]	D-fructose ChEBI	+	builds acid from
[Ref.: #43860]	D-fucose ChEBI	-	builds acid from
[Ref.: #43860]	D-galactose ChEBI	-	builds acid from
[Ref.: #43860]	D-glucose ChEBI	-	builds acid from
[Ref.: #43860]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43860]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43860]	D-mannose ChEBI	-	builds acid from
[Ref.: #43860]	D-ribose ChEBI	+	builds acid from
[Ref.: #43860]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43860]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43860]	D-xylose ChEBI	-	builds acid from
[Ref.: #43860]	erythritol ChEBI	-	builds acid from
[Ref.: #43860]	esculin ferric citrate	+	builds acid from
[Ref.: #43860]	galactitol ChEBI	-	builds acid from
[Ref.: #43860]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43860]	glucose ChEBI	-	builds acid from
[Ref.: #43860]	glycerol ChEBI	+	builds acid from
[Ref.: #43860]	glycogen ChEBI	+	builds acid from
[Ref.: #43860]	inulin ChEBI	-	builds acid from
[Ref.: #43860]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43860]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43860]	L-fucose ChEBI	-	builds acid from
[Ref.: #43860]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43860]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43860]	L-xylose ChEBI	-	builds acid from
[Ref.: #43860]	lactose ChEBI	-	builds acid from
[Ref.: #43860]	maltose hydrate	+	builds acid from
[Ref.: #43860]	mannitol ChEBI	-	builds acid from
[Ref.: #43860]	melezitose ChEBI	-	builds acid from
[Ref.: #43860]	melibiose ChEBI	-	builds acid from
[Ref.: #43860]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43860]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43860]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43860]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43860]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43860]	potassium gluconate ChEBI	+	builds acid from
[Ref.: #43860]	raffinose ChEBI	-	builds acid from
[Ref.: #43860]	rhamnose ChEBI	-	builds acid from
[Ref.: #43860]	ribitol ChEBI	-	builds acid from
[Ref.: #43860]	salicin ChEBI	+	builds acid from
[Ref.: #43860]	skimmed milk	+	hydrolysis
[Ref.: #43860]	sorbitol ChEBI	-	builds acid from
[Ref.: #43860]	starch ChEBI	+	builds acid from
[Ref.: #43860]	starch ChEBI	+	hydrolysis
[Ref.: #43860]	sucrose ChEBI	-	builds acid from
[Ref.: #43860]	trehalose ChEBI	+	builds acid from
[Ref.: #43860]	turanose ChEBI	-	builds acid from
[Ref.: #43860]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43860]	acetoin ChEBI	yes
[Ref.: #43860]	hydrogen sulfide ChEBI	no
[Ref.: #43860]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43860]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #43860]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43860]	beta-galactosidase	-	3.2.1.23
[Ref.: #43860]	catalase	+	1.11.1.6
[Ref.: #43860]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43860]	gelatinase	+
[Ref.: #43860]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43860]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43860]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43860]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	18.9
C16:0	12
C16:1ω7c / C15:0 iso 2OH	9.9
C16:0 iso	7.8
C13:0 iso	7.1
C14:0 iso	5.9
C14:0	5.5
C17:0 iso	5.2
C15:0 anteiso	4.4
C17:1 iso ω10c	3.5
C17:1 iso ω5c	2.6
C14:0 3OH / C16:1 iso I	1.9
C17:0 anteiso	1.7
C16:1ω7c alcohol	1.3
C16:1ω11c	1
C12:0	1
C13:0 anteiso	1

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

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Sample type/isolated from

sediment of the South China Sea

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43860]	16S rRNA gene sequence	KJ812435		GenBank

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus tropicus LM1212-W3	GCA_006457285	complete	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus FDAARGOS_782	GCA_013331815	complete	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus AOA-CPS1	GCA_011040455	chromosome	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus N24	GCA_001884035	contig	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus DE0383	GCA_007676425	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus SN1	GCA_006349625	contig	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus DE0443	GCA_007672275	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus DE0099	GCA_007682035	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus 31-8	GCA_010994445	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus DE0016	GCA_007682405	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus CD3-2	GCA_006349645	contig	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus 23-2	GCA_010994525	scaffold	GenBank	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain CD3-2	2026188.5	wgs	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain DE0016	2026188.10	wgs	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain DE0099	2026188.9	wgs	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain DE0383	2026188.8	wgs	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain DE0443	2026188.7	wgs	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain LM1212-W3	2026188.6	complete	PATRIC	2026188 tax ID
[Ref.: #66792]	Bacillus tropicus strain SN1	2026188.4	wgs	PATRIC	2026188 tax ID

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GC-content

35.2 mol%

genome sequence analysis

Availability in culture collectionsExternal links

[Ref.: #43860]

Culture collection no.

MCCC 1A01406, KCTC 33711, LMG 28874

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#43860

Yang Liu, Juan Du, Qiliang Lai, Runying Zeng, Dezan Ye, Jun Xu, Zongze Shao: Proposal of nine novel species of the Bacillus cereus group. IJSEM 67: 2499 - 2508 2017 ( DOI 10.1099/ijsem.0.001821 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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