Name: Advenella alkanexedens ACCC 06485
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140913

Type strain:

Species: Advenella alkanexedens

Culture col. no.: ACCC 06485, JCM 30465, LAM 0050

Strain history: Z. Ruan; Inst. of Agric. Resour. & Reg. Plann., CAAS, China; LAM0050.

NCBI tax ID(s): 1481665 (species)

Section

Advenella alkanexedens ACCC 06485 is a Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from A biogas slurry sample enriched with diesel oil.

coccus-shaped
colony-forming
Gram-negative
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Alcaligenaceae*
	Genus	*Advenella*
	Species	**Advenella alkanexedens**
	Full Scientific Name (LPSN)	Advenella alkanexedens Wang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43767]	Gram stain	negative

[Ref.: #43767]	Cell length	0.6-0.8 µm

[Ref.: #43767]	Cell width	0.6-0.8 µm

[Ref.: #43767]	Cell shape	coccus-shaped

[Ref.: #43767]	Motility	no

[Ref.: #43767]	Colony size	2.5-4 mm
[Ref.: #43767]	Colony color	Slightly yellow to light brown
[Ref.: #43767]	Colony shape	circular
[Ref.: #43767]	Incubation period	1.5 days
[Ref.: #43767]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43767]

Culture medium

NA plates

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Culture medium growth

		Temperature
[Ref.: #43767]	growth	4-52 °C
[Ref.: #43767]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #43767]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43767]			optimum	8.5
[Ref.: #43767]			growth	5.1-9.7

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

[Ref.: #43767]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43767]		NaCl		growth	0-5.3	%(w/v)
[Ref.: #43767]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43767]	2-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43767]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #43767]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #43767]	2-oxopentanoate ChEBI	+	assimilation
[Ref.: #43767]	4-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43767]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #43767]	acetate ChEBI	+	assimilation
[Ref.: #43767]	adipate ChEBI	+	assimilation
[Ref.: #43767]	alpha-D-glucose ChEBI	-	assimilation
[Ref.: #43767]	arbutin ChEBI	+	builds acid from
[Ref.: #43767]	beta-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #43767]	bromosuccinate ChEBI	+	assimilation
[Ref.: #43767]	cellobiose ChEBI	+	builds acid from
[Ref.: #43767]	cis-aconitate ChEBI	+	assimilation
[Ref.: #43767]	citrate ChEBI	+	assimilation
[Ref.: #43767]	D-alanine ChEBI	+	assimilation
[Ref.: #43767]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #43767]	D-mannitol ChEBI	+/-	assimilation
[Ref.: #43767]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #43767]	D-mannose ChEBI	-	assimilation
[Ref.: #43767]	D-ribose ChEBI	-	builds acid from
[Ref.: #43767]	D-saccharate ChEBI	-	assimilation
[Ref.: #43767]	D-tagatose ChEBI	+/-	builds acid from
[Ref.: #43767]	D-trehalose ChEBI	+	builds acid from
[Ref.: #43767]	decanoate ChEBI	-	assimilation
[Ref.: #43767]	esculin ferric citrate	+/-	builds acid from
[Ref.: #43767]	fucose ChEBI	-	builds acid from
[Ref.: #43767]	galactitol ChEBI	+/-	builds acid from
[Ref.: #43767]	gamma-aminobutyric acid ChEBI	+	assimilation
[Ref.: #43767]	glucuronamide ChEBI	-	assimilation
[Ref.: #43767]	glycerol ChEBI	-	builds acid from
[Ref.: #43767]	inulin ChEBI	+	builds acid from
[Ref.: #43767]	itaconate ChEBI	+	assimilation
[Ref.: #43767]	L-alaninamide ChEBI	+	assimilation
[Ref.: #43767]	L-alanine 4-nitroanilide	+	assimilation
[Ref.: #43767]	L-alanylglycine ChEBI	-	assimilation
[Ref.: #43767]	L-arabinose ChEBI	-	assimilation
[Ref.: #43767]	L-glutamate ChEBI	+	assimilation
[Ref.: #43767]	L-leucine ChEBI	+	assimilation
[Ref.: #43767]	L-ornithine ChEBI	+	assimilation
[Ref.: #43767]	L-proline ChEBI	+	assimilation
[Ref.: #43767]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43767]	L-serine ChEBI	-	assimilation
[Ref.: #43767]	L-sorbose ChEBI	+/-	builds acid from
[Ref.: #43767]	L-threonine ChEBI	+	assimilation
[Ref.: #43767]	lactate ChEBI	+	assimilation
[Ref.: #43767]	lactose ChEBI	+	builds acid from
[Ref.: #43767]	malate ChEBI	+	assimilation
[Ref.: #43767]	maltose ChEBI	+	builds acid from
[Ref.: #43767]	maltose ChEBI	+/-	assimilation
[Ref.: #43767]	melezitose ChEBI	+	builds acid from
[Ref.: #43767]	melibiose ChEBI	+/-	builds acid from
[Ref.: #43767]	methyl pyruvate ChEBI	+	assimilation
[Ref.: #43767]	monomethyl succinate ChEBI	+	assimilation
[Ref.: #43767]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43767]	nitrate ChEBI	+	reduction
[Ref.: #43767]	phenylacetate ChEBI	+	assimilation
[Ref.: #43767]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #43767]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43767]	potassium gluconate ChEBI	+/-	assimilation
[Ref.: #43767]	propionate ChEBI	+	assimilation
[Ref.: #43767]	salicin ChEBI	+	builds acid from
[Ref.: #43767]	sebacic acid ChEBI	+	assimilation
[Ref.: #43767]	sodium citrate ChEBI	+	assimilation
[Ref.: #43767]	sorbitol ChEBI	+/-	builds acid from
[Ref.: #43767]	succinamate ChEBI	+	assimilation
[Ref.: #43767]	succinate ChEBI	+	assimilation
[Ref.: #43767]	sucrose ChEBI	+	builds acid from
[Ref.: #43767]	tween 80 ChEBI	-	assimilation
[Ref.: #43767]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43767]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43767]	acid phosphatase	-	3.1.3.2
[Ref.: #43767]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43767]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43767]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43767]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43767]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43767]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43767]	beta-galactosidase	-	3.2.1.23
[Ref.: #43767]	beta-glucosidase	-	3.2.1.21
[Ref.: #43767]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43767]	catalase	+	1.11.1.6
[Ref.: #43767]	cystine arylamidase	-	3.4.11.3
[Ref.: #43767]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43767]	esterase (C 4)	+
[Ref.: #43767]	esterase Lipase (C 8)	+
[Ref.: #43767]	leucine arylamidase	+	3.4.11.1
[Ref.: #43767]	lipase (C 14)	-
[Ref.: #43767]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43767]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43767]	trypsin	-	3.4.21.4
[Ref.: #43767]	urease	-	3.5.1.5
[Ref.: #43767]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43767]	Sample type/isolated from	A biogas slurry sample enriched with diesel oil

[Ref.: #67770]	Sample type/isolated from	Biogas slurry sample enriched with diesel oil for 30 days
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	-
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ169456 (>99% sequence identity) for Advenella from Microbeatlas

Aquatic Samples	203
Soil Samples	62
Animal Samples	208
Plant Samples	60
Total Samples	533

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43767]	16S rRNA gene sequence	KJ169456		GenBank

[Ref.: #43767]

GC-content

51.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43767]

Culture collection no.

ACCC 06485, JCM 30465, LAM 0050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015	*
Phylogeny	Advenella mandrilli sp. nov., a bacterium isolated from the faeces of Mandrillus sphinx.	Wang Q, Han XL, Fang ZQ, Zhang CL, Li C, Lu T	Antonie Van Leeuwenhoek	10.1007/s10482-021-01695-4	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43767

Huimin Wang, Shan Zhou, Yanwei Wang, Delong Kong, Xiang Guo, Jie Zhu, Weiwei Dong, Zhiyong Ruan: Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples. IJSEM 66: 906 - 911 2016 ( DOI 10.1099/ijsem.0.000811 , PubMed 26620977 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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