Advenella alkanexedens (ACCC 06485, JCM 30465, LAM 0050)

Name: Advenella alkanexedens (ACCC 06485, JCM 30465, LAM 0050)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140913

Type strain

Culture col. no. ACCC 06485 JCM 30465 LAM 0050

NCBI tax ID(s) 1481665

Special Collections JCM Literature strains

Links

Advenella alkanexedens ACCC 06485 is a Gram-negative, coccus-shaped prokaryote that forms circular colonies and was isolated from A biogas slurry sample enriched with diesel oil.

Gram-negative coccus-shaped colony-forming 16S sequence

Name and taxonomic classification

SI-ID 268423

LMG 31889,JCM 30465

@ref 20215

Last LPSN update 2025-12-16 10:03:43

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Advenella

Species Advenella alkanexedens

Full scientific name Advenella alkanexedens Wang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43767	negative	0.6-0.8 µm	0.6-0.8 µm	coccus-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43767	2.5-4 mm	Slightly yellow to light brown	circular	1.5 days	Nutrient agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
43767	NA plates

Culture temp

@ref	Growth	Type	Temperature (°C)
43767	positive	growth	4-52
43767	positive	optimum	30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH
43767	positive	optimum	8.5
43767	positive	growth	5.1-9.7

Physiology and metabolism

Spore formation

43767

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43767	NaCl	positive	growth	0-5.3 %(w/v)
43767	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43767	64552 ChEBI	2-hydroxybutyrate	+	assimilation
43767	16763 ChEBI	2-oxobutanoate	+	assimilation
43767	30916 ChEBI	2-oxoglutarate	+	assimilation
43767	28644 ChEBI	2-oxopentanoate	+	assimilation
43767	16724 ChEBI	4-hydroxybutyrate	+	assimilation
43767	18101 ChEBI	4-hydroxyphenylacetic acid	+	assimilation
43767	30089 ChEBI	acetate	+	assimilation
43767	17128 ChEBI	adipate	+	assimilation
43767	17925 ChEBI	alpha-D-glucose	-	assimilation
43767	18305 ChEBI	arbutin	+	builds acid from
43767	8295 ChEBI	beta-hydroxybutyrate	+	assimilation
43767	73706 ChEBI	bromosuccinate	+	assimilation
43767	17057 ChEBI	cellobiose	+	builds acid from
43767	16383 ChEBI	cis-aconitate	+	assimilation
43767	16947 ChEBI	citrate	+	assimilation
43767	15570 ChEBI	D-alanine	+	assimilation
43767	15824 ChEBI	D-fructose	+/-	builds acid from
43767	16899 ChEBI	D-mannitol	+/-	assimilation
43767	16899 ChEBI	D-mannitol	+/-	builds acid from
43767	16024 ChEBI	D-mannose	-	assimilation
43767	16988 ChEBI	D-ribose	-	builds acid from
43767	33801 ChEBI	D-saccharate	-	assimilation
43767	16443 ChEBI	D-tagatose	+/-	builds acid from
43767	16551 ChEBI	D-trehalose	+	builds acid from
43767	27689 ChEBI	decanoate	-	assimilation
43767		esculin ferric citrate	+/-	builds acid from
43767	33984 ChEBI	fucose	-	builds acid from
43767	16813 ChEBI	galactitol	+/-	builds acid from
43767	16865 ChEBI	gamma-aminobutyric acid	+	assimilation
43767	32323 ChEBI	glucuronamide	-	assimilation
43767	17754 ChEBI	glycerol	-	builds acid from
43767	15443 ChEBI	inulin	+	builds acid from
43767	17240 ChEBI	itaconate	+	assimilation
43767	21217 ChEBI	L-alaninamide	+	assimilation
43767		L-alanine 4-nitroanilide	+	assimilation
43767	73786 ChEBI	L-alanylglycine	-	assimilation
43767	30849 ChEBI	L-arabinose	-	assimilation
43767	29985 ChEBI	L-glutamate	+	assimilation
43767	15603 ChEBI	L-leucine	+	assimilation
43767	15729 ChEBI	L-ornithine	+	assimilation
43767	17203 ChEBI	L-proline	+	assimilation
43767	62345 ChEBI	L-rhamnose	-	builds acid from
43767	17115 ChEBI	L-serine	-	assimilation
43767	17266 ChEBI	L-sorbose	+/-	builds acid from
43767	16857 ChEBI	L-threonine	+	assimilation
43767	24996 ChEBI	lactate	+	assimilation
43767	17716 ChEBI	lactose	+	builds acid from
43767	25115 ChEBI	malate	+	assimilation
43767	17306 ChEBI	maltose	+	builds acid from
43767	17306 ChEBI	maltose	+/-	assimilation
43767	6731 ChEBI	melezitose	+	builds acid from
43767	28053 ChEBI	melibiose	+/-	builds acid from
43767	51850 ChEBI	methyl pyruvate	+	assimilation
43767	75146 ChEBI	monomethyl succinate	+	assimilation
43767	506227 ChEBI	N-acetylglucosamine	-	assimilation
43767	17632 ChEBI	nitrate	+	reduction
43767	18401 ChEBI	phenylacetate	+	assimilation
43767		potassium 5-dehydro-D-gluconate	+	builds acid from
43767	32032 ChEBI	potassium gluconate	-	builds acid from
43767	32032 ChEBI	potassium gluconate	+/-	assimilation
43767	17272 ChEBI	propionate	+	assimilation
43767	17814 ChEBI	salicin	+	builds acid from
43767	41865 ChEBI	sebacic acid	+	assimilation
43767	53258 ChEBI	sodium citrate	+	assimilation
43767	30911 ChEBI	sorbitol	+/-	builds acid from
43767	143136 ChEBI	succinamate	+	assimilation
43767	30031 ChEBI	succinate	+	assimilation
43767	17992 ChEBI	sucrose	+	builds acid from
43767	53426 ChEBI	tween 80	-	assimilation
43767	18222 ChEBI	xylose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43767	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43767	acid phosphatase	-	3.1.3.2
43767	alkaline phosphatase	+	3.1.3.1
43767	alpha-chymotrypsin	-	3.4.21.1
43767	alpha-fucosidase	-	3.2.1.51
43767	alpha-galactosidase	-	3.2.1.22
43767	alpha-glucosidase	-	3.2.1.20
43767	alpha-mannosidase	-	3.2.1.24
43767	beta-galactosidase	-	3.2.1.23
43767	beta-glucosidase	-	3.2.1.21
43767	beta-glucuronidase	-	3.2.1.31
43767	catalase	+	1.11.1.6
43767	cystine arylamidase	-	3.4.11.3
43767	cytochrome oxidase	+	1.9.3.1
43767	esterase (C 4)	+
43767	esterase Lipase (C 8)	+
43767	leucine arylamidase	+	3.4.11.1
43767	lipase (C 14)	-
43767	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43767	naphthol-AS-BI-phosphohydrolase	+
43767	trypsin	-	3.4.21.4
43767	urease	-	3.5.1.5
43767	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Biodegradation
#Engineered	#Contamination
#Environmental	#Terrestrial

Isolation

@ref	Sample type
43767	A biogas slurry sample enriched with diesel oil
67770	Biogas slurry sample enriched with diesel oil for 30 days

Taxonmaps

69479

Global distribution of 16S sequence KJ169456 (>99% sequence identity) for Advenella from Microbeatlas

Aquatic Samples	203
Soil Samples	62
Animal Samples	208
Plant Samples	60
Total Samples	533

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
43767	Advenella alkanexedens strain LAM0050 16S ribosomal RNA gene, partial sequence	KJ169456

GC content

@ref	GC-content (mol%)	Method
43767	51.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples.	Wang H, Zhou S, Wang Y, Kong D, Guo X, Zhu J, Dong W, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.000811	2015
Phylogeny	Advenella mandrilli sp. nov., a bacterium isolated from the faeces of Mandrillus sphinx.	Wang Q, Han XL, Fang ZQ, Zhang CL, Li C, Lu T	Antonie Van Leeuwenhoek	10.1007/s10482-021-01695-4	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43767	Huimin Wang, Shan Zhou, Yanwei Wang, Delong Kong, Xiang Guo, Jie Zhu, Weiwei Dong, Zhiyong Ruan: Advenella alkanexedens sp. nov., an alkane-degrading bacterium isolated from biogas slurry samples. IJSEM 66: 906 - 911 2016 ( DOI 10.1099/ijsem.0.000811 , PubMed 26620977 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Advenella alkanexedens (ACCC 06485, JCM 30465, LAM 0050)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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