Brevundimonas albigilva (KEME 9005-016, KACC 18249, JCM 30385)

Name: Brevundimonas albigilva (KEME 9005-016, KACC 18249, JCM 30385)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140885

Type strain

Strain Designation NHI-13

Culture col. no. KEME 9005-016 KACC 18249 JCM 30385 NHI-13

NCBI tax ID(s) 1312364

Special Collections JCM Literature strains

History JCM <-- J. Kim; Kyonggi Univ., South Korea; NHI-13.

Links

Brevundimonas albigilva NHI-13 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from The forest soil at Kyonggi University.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 359569

JCM 30385

@ref 20215

Last LPSN update 2026-05-29 08:39:49

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Caulobacterales

Family Caulobacteraceae

Genus Brevundimonas

Species Brevundimonas albigilva

Full scientific name Brevundimonas albigilva Pham et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
43711	negative	1-2 µm	0.3-0.4 µm	rod-shaped
125439	negative					94.641

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43711	1-3 mm	Whitish-yellow	circular	5 days	R2A agar plates

Culture and growth conditions

Culture medium

@ref	Name	Growth
43711	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
43711	positive	growth	4-40
43711	positive	optimum	28-30
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
43711	positive	optimum	7-8
43711	positive	growth	6-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43711	aerobe
125439	obligate aerobe	98.596

Spore formation

@ref	Spore formation	Confidence
125439		99.469

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43711		NaCl	positive	growth	0-4 %
43711	slightly halophilic	NaCl	positive	optimum	0.5-2 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43711	37054 ChEBI	3-hydroxybutyrate	+/-	assimilation
43711	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	-	assimilation
43711	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43711		casein	-	hydrolysis
43711	17634 ChEBI	D-glucose	+/-	assimilation
43711	16024 ChEBI	D-mannose	-	assimilation
43711	4853 ChEBI	esculin	-	hydrolysis
43711		esculin ferric citrate	+	assimilation
43711	28087 ChEBI	glycogen	+/-	assimilation
43711	16977 ChEBI	L-alanine	-	assimilation
43711	15971 ChEBI	L-histidine	-	assimilation
43711	17203 ChEBI	L-proline	-	assimilation
43711	62345 ChEBI	L-rhamnose	+/-	assimilation
43711	25115 ChEBI	malate	+/-	assimilation
43711	17306 ChEBI	maltose	+	assimilation
43711	28053 ChEBI	melibiose	-	assimilation
43711	506227 ChEBI	N-acetylglucosamine	-	assimilation
43711	18401 ChEBI	phenylacetate	-	assimilation
43711	32032 ChEBI	potassium gluconate	-	assimilation
43711	17272 ChEBI	propionate	+/-	assimilation
43711	32954 ChEBI	sodium acetate	-	assimilation
43711	53258 ChEBI	sodium citrate	-	assimilation
43711	28017 ChEBI	starch	-	hydrolysis
43711	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43711	28971	ampicillin	10 µg (disc)
43711	17698	chloramphenicol	30 µg (disc)
43711	17833	gentamicin	10 µg (disc)
43711	6104	kanamycin	30 µg (disc)
43711	100147	nalidixic acid	30 µg (disc)
43711	7507	neomycin	30 µg (disc)
43711	28368	novobiocin		30 µg (disc)
43711	18208	penicillin g		10-17 Unit (disc)
43711	28077	rifampicin	5 µg (disc)
43711	17076	streptomycin	10 µg (disc)
43711	9332	sulfamethoxazole	23.75 µg (disc)
43711	27902	tetracycline	30 µg (disc)
43711	45924	trimethoprim	1.25 µg (disc)

Enzymes

@ref	Value	Activity	Ec
43711	acid phosphatase	+	3.1.3.2
43711	alpha-chymotrypsin	+/-	3.4.21.1
43711	alpha-galactosidase	-	3.2.1.22
43711	alpha-glucosidase	+/-	3.2.1.20
43711	beta-galactosidase	-	3.2.1.23
43711	beta-glucosidase	+/-	3.2.1.21
43711	beta-glucuronidase	-	3.2.1.31
43711	catalase	+	1.11.1.6
43711	cystine arylamidase	+/-	3.4.11.3
43711	cytochrome oxidase	-	1.9.3.1
43711	leucine arylamidase	+	3.4.11.1
43711	lipase (C 14)	+/-
43711	trypsin	+/-	3.4.21.4
43711	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43711	The forest soil at Kyonggi University	Suwon	Republic of Korea	KOR	Asia	37.3	127.038 37.3/127.038
67770	Forest soil at Kyonggi Univ.	Suwon	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence KC733808 (>99% sequence identity) for Brevundimonas from Microbeatlas

Aquatic Samples	430
Soil Samples	113
Animal Samples	1101
Plant Samples	291
Total Samples	1935

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM2350396v1 assembly for Brevundimonas albigilva KEME 9005-016	chromosome	GCA_023503965	1312364.4	1312364	72.76

16S sequences

@ref	Description	Accession	Database
43711	Brevundimonas albigilva strain NHI-13 16S ribosomal RNA gene, partial sequence	KC733808

GC content

@ref	GC-content (mol%)	Method
67770	63	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2350396v1 assembly for Brevundimonas albigilva KEME 9005-016
NCBI: GCA_023503965

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no
125439	gram_stain	BacteriaNetⓘ	negative	94.64	no
125439	motility	BacteriaNetⓘ	yes	68.61	no
125439	spore_formation	BacteriaNetⓘ	no	99.47	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequences of the Human-Skin-Originated Brevundimonas albigilva TT17 and the Soil-Originated B. albigilva KEME 9005-016(T) .	Son H, Oh SY, Lee K	Microbiol Resour Announc	10.1128/mra.00776-22	2022
Phylogeny	Brevundimonas albigilva sp. nov., isolated from forest soil.	Pham VHT, Jeong S, Chung S, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000848	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43711	V. H. T. Pham, S. Jeong, S. Chung, J. Kim: Brevundimonas albigilva sp. nov., isolated from forest soil. IJSEM 66: 1144 - 1150 2016 ( DOI 10.1099/ijsem.0.000848 , PubMed 26674350 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

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Brevundimonas albigilva (KEME 9005-016, KACC 18249, JCM 30385)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023503965

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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