Name: Leucobacter populi 06C10-3-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140839

Type strain:

Species: Leucobacter populi

Strain Designation: 06C10-3-11

Culture col. no.: CFCC 12199, KCTC 39685

Strain history: <- Yong Li, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry

NCBI tax ID(s): 1774087 (species)

Section

Leucobacter populi 06C10-3-11 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from From the symptomatic bark of a Populus.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter populi**
	Full Scientific Name (LPSN)	Leucobacter populi Fang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43643]	Gram stain	positive

[Ref.: #43643]	Cell shape	rod-shaped

[Ref.: #43643]	Motility	no

[Ref.: #43643]	Colony size	0.5-1 mm
[Ref.: #43643]	Colony color	Milky-white
[Ref.: #43643]	Colony shape	circular
[Ref.: #43643]	Incubation period	2 days
[Ref.: #43643]	Cultivation medium used	Tryptic Soy Agar

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #43643]	growth	10-45 °C
[Ref.: #43643]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #43643]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43643]			optimum	7-8
[Ref.: #43643]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43643]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43643]		NaCl		growth	0-7	%(w/v)
[Ref.: #43643]		NaCl		optimum	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43643]	(S)-lactate ChEBI	+	carbon source
[Ref.: #43643]	2,3-butanediol ChEBI	+	carbon source
[Ref.: #43643]	2-deoxyadenosine ChEBI	+	carbon source
[Ref.: #43643]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43643]	4-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43643]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #43643]	adenosine ChEBI	+	carbon source
[Ref.: #43643]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43643]	amygdalin ChEBI	+	carbon source
[Ref.: #43643]	beta-cyclodextrin ChEBI	+	carbon source
[Ref.: #43643]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #43643]	D-glucose ChEBI	+	assimilation
[Ref.: #43643]	D-glucose ChEBI	+	fermentation
[Ref.: #43643]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #43643]	D-mannitol ChEBI	+	assimilation
[Ref.: #43643]	D-ribose ChEBI	+	carbon source
[Ref.: #43643]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43643]	esculin ChEBI	+	hydrolysis
[Ref.: #43643]	gelatin ChEBI	-	hydrolysis
[Ref.: #43643]	glucose 1-phosphate ChEBI	+	carbon source
[Ref.: #43643]	glycerol ChEBI	+	carbon source
[Ref.: #43643]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #43643]	glycogen ChEBI	+	carbon source
[Ref.: #43643]	inosine ChEBI	+	carbon source
[Ref.: #43643]	inulin ChEBI	-	carbon source
[Ref.: #43643]	L-alaninamide ChEBI	+	carbon source
[Ref.: #43643]	L-alanine ChEBI	+	carbon source
[Ref.: #43643]	L-arabinose ChEBI	+	carbon source
[Ref.: #43643]	L-asparagine ChEBI	+	carbon source
[Ref.: #43643]	L-glutamate ChEBI	+	carbon source
[Ref.: #43643]	L-serine ChEBI	+	carbon source
[Ref.: #43643]	lactamide ChEBI	+	carbon source
[Ref.: #43643]	maltose ChEBI	-	carbon source
[Ref.: #43643]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #43643]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43643]	myo-inositol ChEBI	+	carbon source
[Ref.: #43643]	N-acetyl-beta-D-mannosamine ChEBI	+	carbon source
[Ref.: #43643]	N-acetyl-L-glutamate ChEBI	+	carbon source
[Ref.: #43643]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43643]	propionate ChEBI	+	carbon source
[Ref.: #43643]	putrescine ChEBI	+	carbon source
[Ref.: #43643]	pyruvate ChEBI	+	carbon source
[Ref.: #43643]	sucrose ChEBI	+	carbon source
[Ref.: #43643]	thymidine ChEBI	+	carbon source
[Ref.: #43643]	thymidine 5'-monophosphate ChEBI	+	carbon source
[Ref.: #43643]	tween 40 ChEBI	+	carbon source
[Ref.: #43643]	tween 80 ChEBI	+	carbon source
[Ref.: #43643]	uridine ChEBI	+	carbon source
[Ref.: #43643]	uridine 5'-monophosphate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43643]	acid phosphatase	+	3.1.3.2
[Ref.: #43643]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43643]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43643]	catalase	+	1.11.1.6
[Ref.: #43643]	cystine arylamidase	+	3.4.11.3
[Ref.: #43643]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43643]	esterase (C 4)	+
[Ref.: #43643]	esterase Lipase (C 8)	+
[Ref.: #43643]	leucine arylamidase	+	3.4.11.1
[Ref.: #43643]	lipase (C 14)	+/-
[Ref.: #43643]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43643]	trypsin	+/-	3.4.21.4
[Ref.: #43643]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From the symptomatic bark of a Populus
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #43643]	Sample type/isolated from	symptomatic bark samples of Populus x euramenicana collected from Puyang City
[Ref.: #43643]	Geographic location (country and/or sea, region)	Puyang City, Henan Province
[Ref.: #43643]	Country	China
[Ref.: #43643]	Country ISO 3 Code	CHN
[Ref.: #43643]	Continent	Asia
[Ref.: #43643]	Geographic location	35.5000°/114.8660°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT359554 (>99% sequence identity) for Leucobacter populi subclade from Microbeatlas

Aquatic Samples	43
Soil Samples	266
Animal Samples	447
Plant Samples	26
Total Samples	782

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43643]	16S rRNA gene sequence	KT359554		GenBank

[Ref.: #43643]

GC-content

69.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43643]

Culture collection no.

CFCC 12199, KCTC 39685

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter populi sp. nov. isolated from a symptomatic bark of Populus x euramericana canker.	Fang W, Li X, Tan XM, Wang LF, Piao CG, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.001020	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43643

Wei Fang, Xia Li, Xiu-mei Tan, Lai-fa Wang, Chun-gen Piao, Yong Li: Leucobacter populi sp. nov. isolated from a symptomatic bark of Populus × euramericana canker. IJSEM 66: 2254 - 2258 2016 ( DOI 10.1099/ijsem.0.001020 , PubMed 26971343 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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