Name: Grimontia celeris 96-237
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140804

Type strain:

Species: Grimontia celeris

Strain Designation: 96-237

Culture col. no.: CECT 9029, KCTC 42960, LMG 29238

NCBI tax ID(s): 1796497 (species)

Section

Grimontia celeris 96-237 is a facultative anaerobe, non-halophilic, Gram-negative bacterium that forms circular colonies and was isolated from seawater on Puzol Beach.

colony-forming
Gram-negative
motile
spiral-shaped
facultative anaerobe
non-halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Grimontia*
	Species	**Grimontia celeris**
	Full Scientific Name (LPSN)	Grimontia celeris corrig. Pujalte et al. 2016

Synonym

Grimontia celer

Information on morphological and physiological properties Morphology

[Ref.: #43587]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #43587]	Cell length	1.8-2.8 µm

[Ref.: #43587]	Cell width	0.5-0.7 µm

[Ref.: #43587]	Cell shape	spiral-shaped

[Ref.: #43587]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.749

[Ref.: #43587]	Colony color	Green
[Ref.: #43587]	Incubation period	2 days
[Ref.: #43587]	Cultivation medium used	Thiosulfate Citrate Bile Sucrose (TCBS) agar

[Ref.: #43587]	Colony shape	circular
[Ref.: #43587]	Incubation period	2 days
[Ref.: #43587]	Cultivation medium used	Marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43587]

Culture medium

Marine agar (MA)

[Ref.: #43587]

Culture medium growth

[Ref.: #43587]

Culture medium

Thiosulfate Citrate Bile Sucrose (TCBS) agar

[Ref.: #43587]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43587]			growth	15-40 °C
[Ref.: #43587]		no	growth	4 °C

[Ref.: #43587]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43587]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.879

[Ref.: #43587]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43587]		NaCl	no	growth	0	%(w/v)
[Ref.: #43587]		NaCl		maximum	9	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43587]	2-oxoglutarate ChEBI	+	carbon source
[Ref.: #43587]	2-oxoglutarate ChEBI	+	energy source
[Ref.: #43587]	3-hydroxybutyrate ChEBI	-	growth
[Ref.: #43587]	acetate ChEBI	-	growth
[Ref.: #43587]	alginate ChEBI	-	hydrolysis
[Ref.: #43587]	butyrate ChEBI	-	growth
[Ref.: #43587]	casein	+	hydrolysis
[Ref.: #43587]	cellobiose ChEBI	-	growth
[Ref.: #43587]	chitin ChEBI	-	hydrolysis
[Ref.: #43587]	citrate ChEBI	+	carbon source
[Ref.: #43587]	citrate ChEBI	+	energy source
[Ref.: #43587]	D-fructose ChEBI	+	carbon source
[Ref.: #43587]	D-fructose ChEBI	+	energy source
[Ref.: #43587]	D-fructose ChEBI	+	fermentation
[Ref.: #43587]	D-galactose ChEBI	+	carbon source
[Ref.: #43587]	D-galactose ChEBI	+	energy source
[Ref.: #43587]	D-galactose ChEBI	+	fermentation
[Ref.: #43587]	D-galacturonic acid ChEBI	-	growth
[Ref.: #43587]	D-gluconate ChEBI	-	growth
[Ref.: #43587]	D-glucose ChEBI	+	carbon source
[Ref.: #43587]	D-glucose ChEBI	+	energy source
[Ref.: #43587]	D-glucuronate ChEBI	-	growth
[Ref.: #43587]	D-mannitol ChEBI	+	carbon source
[Ref.: #43587]	D-mannitol ChEBI	+	energy source
[Ref.: #43587]	D-mannitol ChEBI	+	fermentation
[Ref.: #43587]	D-mannose ChEBI	+	carbon source
[Ref.: #43587]	D-mannose ChEBI	+	energy source
[Ref.: #43587]	D-mannose ChEBI	+	fermentation
[Ref.: #43587]	D-ribose ChEBI	+	carbon source
[Ref.: #43587]	D-ribose ChEBI	+	energy source
[Ref.: #43587]	D-ribose ChEBI	+	fermentation
[Ref.: #43587]	D-saccharate ChEBI	-	growth
[Ref.: #43587]	D-sorbitol ChEBI	-	growth
[Ref.: #43587]	D-trehalose ChEBI	-	growth
[Ref.: #43587]	D-trehalose ChEBI	+	fermentation
[Ref.: #43587]	D-xylose ChEBI	-	growth
[Ref.: #43587]	fumarate ChEBI	+	carbon source
[Ref.: #43587]	fumarate ChEBI	+	energy source
[Ref.: #43587]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #43587]	gamma-aminobutyric acid ChEBI	+	energy source
[Ref.: #43587]	gelatin ChEBI	+	hydrolysis
[Ref.: #43587]	glucose ChEBI	+	fermentation
[Ref.: #43587]	glycerol ChEBI	+	carbon source
[Ref.: #43587]	glycerol ChEBI	+	energy source
[Ref.: #43587]	glycine ChEBI	+	carbon source
[Ref.: #43587]	glycine ChEBI	+	energy source
[Ref.: #43587]	L-alanine ChEBI	+	carbon source
[Ref.: #43587]	L-alanine ChEBI	+	energy source
[Ref.: #43587]	L-arabinose ChEBI	-	growth
[Ref.: #43587]	L-arginine ChEBI	-	growth
[Ref.: #43587]	L-aspartate ChEBI	+	carbon source
[Ref.: #43587]	L-aspartate ChEBI	+	energy source
[Ref.: #43587]	L-citrulline ChEBI	+	carbon source
[Ref.: #43587]	L-citrulline ChEBI	+	energy source
[Ref.: #43587]	L-glutamate ChEBI	+	carbon source
[Ref.: #43587]	L-glutamate ChEBI	+	energy source
[Ref.: #43587]	L-histidine ChEBI	-	growth
[Ref.: #43587]	L-leucine ChEBI	-	growth
[Ref.: #43587]	L-lysine ChEBI	-	growth
[Ref.: #43587]	L-ornithine ChEBI	+	carbon source
[Ref.: #43587]	L-ornithine ChEBI	+	energy source
[Ref.: #43587]	L-rhamnose ChEBI	-	growth
[Ref.: #43587]	L-serine ChEBI	+	carbon source
[Ref.: #43587]	L-serine ChEBI	+	energy source
[Ref.: #43587]	L-threonine ChEBI	+	carbon source
[Ref.: #43587]	L-threonine ChEBI	+	energy source
[Ref.: #43587]	L-tyrosine ChEBI	-	growth
[Ref.: #43587]	lactose ChEBI	-	growth
[Ref.: #43587]	malate ChEBI	+	carbon source
[Ref.: #43587]	malate ChEBI	+	energy source
[Ref.: #43587]	maltose ChEBI	-	growth
[Ref.: #43587]	maltose ChEBI	+/-	fermentation
[Ref.: #43587]	melibiose ChEBI	+	carbon source
[Ref.: #43587]	melibiose ChEBI	+	energy source
[Ref.: #43587]	melibiose ChEBI	+	fermentation
[Ref.: #43587]	myo-inositol ChEBI	+	carbon source
[Ref.: #43587]	myo-inositol ChEBI	+	energy source
[Ref.: #43587]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43587]	N-acetylglucosamine ChEBI	+	energy source
[Ref.: #43587]	N-acetylglucosamine ChEBI	+	fermentation
[Ref.: #43587]	nitrate ChEBI	+/-	reduction
[Ref.: #43587]	propionate ChEBI	-	growth
[Ref.: #43587]	putrescine ChEBI	+	carbon source
[Ref.: #43587]	putrescine ChEBI	+	energy source
[Ref.: #43587]	pyruvate ChEBI	+	carbon source
[Ref.: #43587]	pyruvate ChEBI	+	energy source
[Ref.: #43587]	salicin ChEBI	-	growth
[Ref.: #43587]	sarcosine ChEBI	-	growth
[Ref.: #43587]	starch ChEBI	-	hydrolysis
[Ref.: #43587]	succinate ChEBI	+	carbon source
[Ref.: #43587]	succinate ChEBI	+	energy source
[Ref.: #43587]	sucrose ChEBI	-	growth
[Ref.: #43587]	sucrose ChEBI	+	fermentation
[Ref.: #43587]	trans-aconitate ChEBI	-	growth
[Ref.: #43587]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43587]	acetoin ChEBI	no
[Ref.: #43587]	hydrogen sulfide ChEBI	no
[Ref.: #43587]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43587]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43587]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43587]	catalase	+	1.11.1.6
[Ref.: #43587]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43587]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43587]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43587]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43587]	Sample type/isolated from	seawater on Puzol Beach
[Ref.: #43587]	Geographic location (country and/or sea, region)	Puzol Beach, Valencia
[Ref.: #43587]	Country	Spain
[Ref.: #43587]	Country ISO 3 Code	ESP
[Ref.: #43587]	Continent	Europe
[Ref.: #43587]	Geographic location	39.6070°/-0.2650°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT160079 (>99% sequence identity) for Grimontia from Microbeatlas

Aquatic Samples	309
Soil Samples	1
Animal Samples	16
Plant Samples
Total Samples	326

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43587]	16S rRNA gene sequence	LT160079		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Grimontia celer CECT 9029	GCA_900055185	contig	GenBank	1796497 tax ID	*
[Ref.: #66792]	Grimontia sp. 96-237	1796497.3	wgs	PATRIC	1796497 tax ID	*
[Ref.: #66792]	Grimontia celer CECT 9029	2713897040	draft	JGI IMG/M	1796497 tax ID	*

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GC-content

48.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Grimontia sp. 96-237 PATRIC: 1796497.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Grimontia sp. 96-237 PATRIC: 1796497.3
[Ref.: #69480]	motile	yes	92.942	yes
[Ref.: #69480]	gram-positive	no	98.785	yes
[Ref.: #69480]	anaerobic	no	96.611	yes
[Ref.: #69480]	aerobic	yes	86.095	no
[Ref.: #69480]	halophile	yes	54.258	no
[Ref.: #69480]	spore-forming	no	94.091	no
[Ref.: #69480]	glucose-util	yes	94.647	yes
[Ref.: #69480]	flagellated	yes	88.252	no
[Ref.: #69480]	thermophile	no	99.66	no
[Ref.: #69480]	glucose-ferment	yes	84.799	no

Availability in culture collections External links

[Ref.: #43587]

Culture collection no.

CECT 9029, KCTC 42960, LMG 29238

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Grimontia sedimenti sp. nov., isolated from benthic sediments near coral reefs south of Kuwait.	Mahmoud H, Jose L, Eapen S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004720	2021	*
Phylogeny	Corallibacterium pacifica gen. nov., sp. nov., a Novel Bacterium of the Family Vibrionaceae Isolated from Hard Coral.	Hettiarachchi SA, Lee SJ, Lee Y, Kwon YK, Kwon KK, Yang SH, Jo E, Kang DH, Oh C	Curr Microbiol	10.1007/s00284-018-1455-7	2018	*
Phylogeny	Grimontia celer sp. nov., from sea water.	Pujalte MJ, Lucena T, Rodrigo-Torres L, La Mura A, Ruvira MA, Arahal DR	Int J Syst Evol Microbiol	10.1099/ijsem.0.001119	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43587

María J. Pujalte, Teresa Lucena, Lidia Rodrigo-Torres, Alexandra La Mura, María A. Ruvira, David R. Arahal: Grimontia celer sp. nov., from sea water. IJSEM 66: 2906 - 2909 2016 ( DOI 10.1099/ijsem.0.001119 , PubMed 27125858 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Grimontia sp. 96-237

Grimontia sp. 96-237

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