Name: Edaphobacter acidisoli 4G-K17
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140755

Type strain:

Species: Edaphobacter acidisoli

Strain Designation: 4G-K17

Culture col. no.: CGMCC 1.15447, LMG 29212

NCBI tax ID(s): 2040573 (species)

Section

Edaphobacter acidisoli 4G-K17 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from forest soils of Dinghushan Biosphere Reserve .

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Terriglobales*
	Family	*Acidobacteriaceae*
	Genus	*Edaphobacter*
	Species	**Edaphobacter acidisoli**
	Full Scientific Name (LPSN)	Edaphobacter acidisoli Xia et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43533]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.978

[Ref.: #43533]	Cell length	1.1-1.5 µm

[Ref.: #43533]	Cell width	0.3-0.5 µm

[Ref.: #43533]	Cell shape	rod-shaped

[Ref.: #43533]	Motility	no

[Ref.: #43533]	Colony color	light beige
[Ref.: #43533]	Colony shape	circular
[Ref.: #43533]	Incubation period	14 days
[Ref.: #43533]	Cultivation medium used	1:10 diluted HD medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

1:10 diluted HD medium

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43533]			growth	10-42 °C
[Ref.: #43533]			optimum	28 °C

[Ref.: #43533]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43533]			optimum	4-5.5
[Ref.: #43533]			growth	3-7

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43533]		NaCl		growth	0-2.5	%
[Ref.: #43533]		NaCl		optimum	0-1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43533]	adipate ChEBI	-	growth
[Ref.: #43533]	amygdalin ChEBI	+	growth
[Ref.: #43533]	arbutin ChEBI	+	growth
[Ref.: #43533]	cellobiose ChEBI	+	growth
[Ref.: #43533]	D-arabinose ChEBI	+	growth
[Ref.: #43533]	D-arabitol ChEBI	-	growth
[Ref.: #43533]	D-fructose ChEBI	+	growth
[Ref.: #43533]	D-fucose ChEBI	-	growth
[Ref.: #43533]	D-galactose ChEBI	+	growth
[Ref.: #43533]	D-glucose ChEBI	+	growth
[Ref.: #43533]	D-lyxose ChEBI	-	growth
[Ref.: #43533]	D-mannitol ChEBI	-	growth
[Ref.: #43533]	D-mannose ChEBI	+	growth
[Ref.: #43533]	D-ribose ChEBI	-	growth
[Ref.: #43533]	D-sorbitol ChEBI	-	growth
[Ref.: #43533]	D-tagatose ChEBI	-	growth
[Ref.: #43533]	D-xylose ChEBI	+	growth
[Ref.: #43533]	decanoate ChEBI	+	growth
[Ref.: #43533]	esculin ChEBI	+	growth
[Ref.: #43533]	galactitol ChEBI	-	growth
[Ref.: #43533]	gentiobiose ChEBI	-	growth
[Ref.: #43533]	glucose ChEBI	-	fermentation
[Ref.: #43533]	glycerol ChEBI	-	growth
[Ref.: #43533]	glycogen ChEBI	+	growth
[Ref.: #43533]	inulin ChEBI	+	growth
[Ref.: #43533]	L-arabinose ChEBI	+	growth
[Ref.: #43533]	L-arabitol ChEBI	-	growth
[Ref.: #43533]	L-fucose ChEBI	-	growth
[Ref.: #43533]	L-rhamnose ChEBI	+	growth
[Ref.: #43533]	L-sorbose ChEBI	-	growth
[Ref.: #43533]	L-xylose ChEBI	-	growth
[Ref.: #43533]	lactose ChEBI	+	growth
[Ref.: #43533]	malate ChEBI	-	growth
[Ref.: #43533]	maltose ChEBI	+	growth
[Ref.: #43533]	melezitose ChEBI	+	growth
[Ref.: #43533]	melibiose ChEBI	+	growth
[Ref.: #43533]	methyl alpha-D-glucopyranoside ChEBI	+	growth
[Ref.: #43533]	methyl alpha-D-mannoside ChEBI	+	growth
[Ref.: #43533]	methyl beta-D-xylopyranoside ChEBI	+	growth
[Ref.: #43533]	myo-inositol ChEBI	-	growth
[Ref.: #43533]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43533]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #43533]	nitrate ChEBI	-	reduction
[Ref.: #43533]	phenylacetate ChEBI	-	growth
[Ref.: #43533]	potassium 2-dehydro-D-gluconate	-	growth
[Ref.: #43533]	potassium 5-dehydro-D-gluconate	-	growth
[Ref.: #43533]	potassium gluconate ChEBI	-	growth
[Ref.: #43533]	raffinose ChEBI	-	growth
[Ref.: #43533]	ribitol ChEBI	-	growth
[Ref.: #43533]	salicin ChEBI	-	growth
[Ref.: #43533]	sodium citrate ChEBI	-	growth
[Ref.: #43533]	starch ChEBI	+	growth
[Ref.: #43533]	sucrose ChEBI	+	growth
[Ref.: #43533]	trehalose ChEBI	-	growth
[Ref.: #43533]	turanose ChEBI	+	growth
[Ref.: #43533]	xylitol ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43533]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43533]	acid phosphatase	+	3.1.3.2
[Ref.: #43533]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43533]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43533]	alpha-fucosidase	+	3.2.1.51
[Ref.: #43533]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43533]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43533]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43533]	beta-galactosidase	+	3.2.1.23
[Ref.: #43533]	beta-glucosidase	+	3.2.1.21
[Ref.: #43533]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43533]	catalase	+	1.11.1.6
[Ref.: #43533]	cystine arylamidase	+	3.4.11.3
[Ref.: #43533]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43533]	esterase (C 4)	-
[Ref.: #43533]	esterase Lipase (C 8)	+
[Ref.: #43533]	leucine arylamidase	+	3.4.11.1
[Ref.: #43533]	lipase (C 14)	-
[Ref.: #43533]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43533]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43533]	trypsin	+	3.4.21.4
[Ref.: #43533]	urease	+	3.5.1.5
[Ref.: #43533]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43533]	Sample type/isolated from	forest soils of Dinghushan Biosphere Reserve (DHSBR)
[Ref.: #43533]	Geographic location (country and/or sea, region)	Dinghushan Biosphere Reserve (DHSBR), Guangdong Province
[Ref.: #43533]	Country	China
[Ref.: #43533]	Country ISO 3 Code	CHN
[Ref.: #43533]	Continent	Asia
[Ref.: #43533]	Geographic location	23.1660°/112.5160°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY457230 (>99% sequence identity) for Edaphobacter acidisoli subclade from Microbeatlas

Aquatic Samples	1
Soil Samples	120
Animal Samples	3
Plant Samples	12
Total Samples	136

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43533]	16S rRNA gene sequence	KY457230		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Edaphobacter acidisoli CGMCC 1.15447	GCA_014642855	contig	GenBank	2040573 tax ID	*
[Ref.: #66792]	Edaphobacter acidisoli strain CGMCC 1.15447	2040573.3	wgs	PATRIC	2040573 tax ID	*
[Ref.: #66792]	Edaphobacter acidisoli 4G-K17	GCA_025685745	contig	GenBank	2040573 tax ID	*

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GC-content

57.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Edaphobacter acidisoli strain CGMCC 1.15447 PATRIC: 2040573.3
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Edaphobacter acidisoli strain CGMCC 1.15447 PATRIC: 2040573.3
[Ref.: #69480]	motile	no	64.387	yes
[Ref.: #69480]	gram-positive	no	97.956	yes
[Ref.: #69480]	anaerobic	no	98.526	yes
[Ref.: #69480]	aerobic	yes	85.167	yes
[Ref.: #69480]	halophile	no	93.836	no
[Ref.: #69480]	spore-forming	no	91.527	no
[Ref.: #69480]	glucose-util	yes	79.48	no
[Ref.: #69480]	flagellated	no	91.846	yes
[Ref.: #69480]	thermophile	no	80.636	yes
[Ref.: #69480]	glucose-ferment	no	92.614	yes

Availability in culture collections External links

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Culture collection no.

CGMCC 1.15447, LMG 29212

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Edaphobacter acidisoli sp. nov., an acidobacterium isolated from forest soil.	Xia F, Cai YM, Chen DX, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002300	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43533

Fan Xia, Yu-min Cai, Dong-xia Chen, Li-hong Qiu: Edaphobacter acidisoli sp. nov., an acidobacterium isolated from forest soil. IJSEM 67: 4260 - 4265 2017 ( DOI 10.1099/ijsem.0.002300 , PubMed 28945535 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Edaphobacter acidisoli strain CGMCC 1.15447

Edaphobacter acidisoli strain CGMCC 1.15447

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