Shewanella gaetbuli (DSM 16422, JCM 11814, KCCM 41648)

Name: Shewanella gaetbuli (DSM 16422, JCM 11814, KCCM 41648)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14073

Type strain

Strain Designation TF-27

Culture col. no. DSM 16422 JCM 11814 KCCM 41648 TF-27 KCTC 22431

NCBI tax ID(s) 220752

Special Collections DSMZ JCM KCTC Literature strains

History <- J.-H. Yoon; TF-27 J.-H. Yoon TF-27.

Links

Shewanella gaetbuli TF-27 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from tidal flat.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 131434

JCM 11814,DSM 16422

@ref 20215

Last LPSN update 2025-12-16 09:50:15

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella gaetbuli

Full scientific name Shewanella gaetbuli Yoon et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29946	negative	2.25 µm	0.6 µm	rod-shaped
125438	negative					97.5

Pigmentation

29946

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6443	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6443	positive	growth	28	mesophilic
29946	positive	growth	25-35	mesophilic
29946	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
29946	positive	optimum	7.5
29946	positive	growth	05-08

Physiology and metabolism

Oxygen tolerance

29946

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
29946
125438		90.945

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29946	NaCl	positive	growth	<8 %
29946	NaCl	positive	optimum	2 %

Observation

67770

Observationquinones: MK-7, Q-7, Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29946	4853 ChEBI	esculin	+	hydrolysis
29946	33942 ChEBI	ribose	+	carbon source
29946	27082 ChEBI	trehalose	+	carbon source
29946	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29946	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6443	tidal flat	Mokpo City	Republic of Korea	KOR	Asia
67770	Tidal flat near Mokpo		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY190533 (>99% sequence identity) for Shewanella gaetbuli subclade from Microbeatlas

Aquatic Samples	116
Soil Samples
Animal Samples	9
Plant Samples
Total Samples	125

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6443	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2328406v1 assembly for Shewanella gaetbuli DSM 16422	contig	GCA_023284065	220752.6	8045908484	220752	71.55

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29946	Shewanella gaetbuli 16S ribosomal RNA gene, partial sequence	AY190533	1497		220752

GC content

@ref	GC-content (mol%)	Method
29946	42
67770	42	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella gaetbuli DSM 16422
NCBI: GCA_023284065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	no
125438	anaerobic	anaerobicⓘ	no	94.20	yes
125438	aerobic	aerobicⓘ	no	60.21	yes
125438	spore-forming	spore-formingⓘ	no	90.95	yes
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	yes	82.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella intestini sp. nov., isolated from the intestine of abalone, Haliotis diversicolor.	Gai Y, Huang Z, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001878	2017
Phylogeny	Psychrobium conchae gen. nov., sp. nov., a psychrophilic marine bacterium isolated from the Iheya North hydrothermal field.	Nogi Y, Abe M, Kawagucci S, Hirayama H	Int J Syst Evol Microbiol	10.1099/ijs.0.066738-0	2014
Phylogeny	Shewanella aestuarii sp. nov., a marine bacterium isolated from a tidal flat.	Park HY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.055178-0	2013
Phylogeny	Shewanella spongiae sp. nov., isolated from a marine sponge.	Yang SH, Kwon KK, Lee HS, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64540-0	2006
Phylogeny	Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea.	Yoon JH, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02731-0	2004

References

#6443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16422
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26315	IJSEM 487 2004 ( DOI 10.1099/ijs.0.02731-0 , PubMed 15023965 )
#29946	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26315
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella gaetbuli (DSM 16422, JCM 11814, KCCM 41648)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_023284065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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