Name: Shewanella gaetbuli TF-27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14073

Type strain:

Species: Shewanella gaetbuli

Strain Designation: TF-27

Culture col. no.: DSM 16422, JCM 11814, KCCM 41648, KCTC 22431

Strain history: J.-H. Yoon TF-27.

NCBI tax ID(s): 220752 (species)

SI-ID 131434

JCM 11814, DSM 16422

Section

Shewanella gaetbuli TF-27 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella gaetbuli**
	Full Scientific Name (LPSN)	Shewanella gaetbuli Yoon et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29946]	Gram stain	negative

[Ref.: #29946]	Cell length	2.25 µm

[Ref.: #29946]	Cell width	0.6 µm

[Ref.: #29946]	Cell shape	rod-shaped

[Ref.: #29946]	Motility	yes

[Ref.: #29946]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6443]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6443]

Culture medium growth

[Ref.: #6443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6443]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6443]	growth	28 °C
[Ref.: #29946]	growth	25-35 °C
[Ref.: #29946]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #6443]	Temperature range	mesophilic
[Ref.: #29946]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29946]			optimum	7.5
[Ref.: #29946]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29946]

Oxygen tolerance

facultative anaerobe

[Ref.: #29946]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29946]		NaCl		growth	<8	%
[Ref.: #29946]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: MK-7, Q-7, Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29946]	esculin ChEBI	+	hydrolysis
[Ref.: #29946]	ribose ChEBI	+	carbon source
[Ref.: #29946]	trehalose ChEBI	+	carbon source
[Ref.: #29946]	tween 80 ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29946]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6443]	Sample type/isolated from	tidal flat
[Ref.: #6443]	Geographic location (country and/or sea, region)	Mokpo City
[Ref.: #6443]	Country	Republic of Korea
[Ref.: #6443]	Country ISO 3 Code	KOR
[Ref.: #6443]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tidal flat near Mokpo
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY190533 (>99% sequence identity) for Shewanella gaetbuli subclade from Microbeatlas

Aquatic Samples	116
Soil Samples
Animal Samples	9
Plant Samples
Total Samples	125

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6443]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29946]	Shewanella gaetbuli 16S ribosomal RNA gene, partial sequence	AY190533	1497	GenBank	220752 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella gaetbuli DSM 16422	GCA_023284065	contig	GenBank	220752 tax ID	*

[Ref.: #29946]	GC-content	42 mol%
[Ref.: #67770]	GC-content	42 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella gaetbuli DSM 16422 NCBI: GCA_023284065.1
[Ref.: #69480]	flagellated	yes	80.852	no
[Ref.: #69480]	gram-positive	no	98.88	yes
[Ref.: #69480]	anaerobic	no	98.162	yes
[Ref.: #69480]	aerobic	no	51.425	yes
[Ref.: #69480]	halophile	yes	51.525	no
[Ref.: #69480]	spore-forming	no	94.611	yes
[Ref.: #69480]	motile	yes	85.544	no
[Ref.: #69480]	glucose-ferment	no	68.036	no
[Ref.: #69480]	thermophile	no	98.135	yes
[Ref.: #69480]	glucose-util	yes	90.387	no

Availability in culture collections External links

[Ref.: #6443]

Culture collection no.

DSM 16422, JCM 11814, KCCM 41648, KCTC 22431

[Ref.: #83242]

SI-ID 131434

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella intestini sp. nov., isolated from the intestine of abalone, Haliotis diversicolor.	Gai Y, Huang Z, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001878	2017	*
Phylogeny	Psychrobium conchae gen. nov., sp. nov., a psychrophilic marine bacterium isolated from the Iheya North hydrothermal field.	Nogi Y, Abe M, Kawagucci S, Hirayama H	Int J Syst Evol Microbiol	10.1099/ijs.0.066738-0	2014	*
Phylogeny	Shewanella aestuarii sp. nov., a marine bacterium isolated from a tidal flat.	Park HY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.055178-0	2013	*
Phylogeny	Shewanella spongiae sp. nov., isolated from a marine sponge.	Yang SH, Kwon KK, Lee HS, Kim SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64540-0	2006	*
Phylogeny	Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea.	Yoon JH, Kang KH, Oh TK, Park YH	Int J Syst Evol Microbiol	10.1099/ijs.0.02731-0	2004	*

References

#6443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16422

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29946

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26315 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83242

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID131434.1 )

#26315

IJSEM 487 2004 ( DOI 10.1099/ijs.0.02731-0 , PubMed 15023965 )

* These data were automatically processed and therefore are not curated

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Shewanella gaetbuli DSM 16422

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