Name: Domibacillus mangrovi KCTC 33820
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140687

Type strain:

Species: Domibacillus mangrovi

Culture col. no.: KCTC 33820, MTCC 12571, DSM 100930, SAOS 44, JCM 32631

Strain history: <- Srinivasan Krishnamurthi, CSIR-Institute of Microbial Technology

NCBI tax ID(s): 1714354 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Domibacillus mangrovi KCTC 33820 is an obligate aerobe, spore-forming, Gram-positive bacterium that was isolated from mangrove sediment soil from the Salim Ali Bird Sanctuary.

Gram-positive
motile
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Domibacillus*
	Species	**Domibacillus mangrovi**
	Full Scientific Name (LPSN)	Domibacillus mangrovi Verma et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43455]	Gram stain	positive

[Ref.: #43455]	Cell length	2.1 µm

[Ref.: #43455]	Cell width	0.8 µm

[Ref.: #43455]	Cell shape	rod-shaped

[Ref.: #43455]	Motility	yes

[Ref.: #43455]	Colony size	1 mm
[Ref.: #43455]	Colony color	cream yellow
[Ref.: #43455]	Incubation period	1 day
[Ref.: #43455]	Cultivation medium used	TSBA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43455]

Culture medium

TSBA

[Ref.: #43455]

Culture medium growth

		Temperature
[Ref.: #43455]	growth	15-40 °C
[Ref.: #43455]	optimum	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #43455]			optimum	7-7.5
[Ref.: #43455]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43455]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #43455]	Spore description	subterminal or terminal position, spherical or ellipsoidal in swollen sporangia
[Ref.: #43455]	Type of spore	endospore
[Ref.: #43455]	Ability of spore formation	yes
[Ref.: #125438]	Ability of spore formation	yes Confidence in %90.62

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43455]		NaCl		growth	0-6	%(w/v)
[Ref.: #43455]		NaCl		optimum	2	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43455]	acetate ChEBI	+/-	oxidation
[Ref.: #43455]	acetoacetate ChEBI	+/-	oxidation
[Ref.: #43455]	adipate ChEBI	-	assimilation
[Ref.: #43455]	arabinose ChEBI	-	builds acid from
[Ref.: #43455]	casein	-	hydrolysis
[Ref.: #43455]	cellobiose ChEBI	-	builds acid from
[Ref.: #43455]	D-fructose 6-phosphate ChEBI	+/-	oxidation
[Ref.: #43455]	D-glucose ChEBI	+/-	builds acid from
[Ref.: #43455]	D-glucuronate ChEBI	+	oxidation
[Ref.: #43455]	D-mannitol ChEBI	-	assimilation
[Ref.: #43455]	D-mannose ChEBI	-	assimilation
[Ref.: #43455]	decanoate ChEBI	-	assimilation
[Ref.: #43455]	dextrin ChEBI	+/-	oxidation
[Ref.: #43455]	esculin ChEBI	-	assimilation
[Ref.: #43455]	esculin ChEBI	-	hydrolysis
[Ref.: #43455]	fructose ChEBI	-	builds acid from
[Ref.: #43455]	galactitol ChEBI	-	builds acid from
[Ref.: #43455]	galactose ChEBI	-	builds acid from
[Ref.: #43455]	gelatin ChEBI	+	assimilation
[Ref.: #43455]	gelatin ChEBI	+	hydrolysis
[Ref.: #43455]	glucose ChEBI	-	fermentation
[Ref.: #43455]	glucose ChEBI	+	assimilation
[Ref.: #43455]	glucose ChEBI	+	carbon source
[Ref.: #43455]	glucuronamide ChEBI	+	oxidation
[Ref.: #43455]	inulin ChEBI	-	builds acid from
[Ref.: #43455]	L-arabinose ChEBI	-	assimilation
[Ref.: #43455]	L-glutamate ChEBI	+	oxidation
[Ref.: #43455]	L-pyroglutamic acid ChEBI	+	oxidation
[Ref.: #43455]	lactose ChEBI	-	builds acid from
[Ref.: #43455]	lactose ChEBI	+/-	oxidation
[Ref.: #43455]	malate ChEBI	-	assimilation
[Ref.: #43455]	maltose ChEBI	-	assimilation
[Ref.: #43455]	maltose ChEBI	-	builds acid from
[Ref.: #43455]	mannitol ChEBI	-	builds acid from
[Ref.: #43455]	mannose ChEBI	-	builds acid from
[Ref.: #43455]	melibiose ChEBI	+	builds acid from
[Ref.: #43455]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43455]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43455]	N-acetyl-beta-D-mannosamine ChEBI	+	oxidation
[Ref.: #43455]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43455]	nitrate ChEBI	-	reduction
[Ref.: #43455]	phenylacetate ChEBI	-	assimilation
[Ref.: #43455]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43455]	raffinose ChEBI	-	builds acid from
[Ref.: #43455]	rhamnose ChEBI	-	builds acid from
[Ref.: #43455]	salicin ChEBI	-	builds acid from
[Ref.: #43455]	sodium citrate ChEBI	-	assimilation
[Ref.: #43455]	sorbitol ChEBI	-	builds acid from
[Ref.: #43455]	starch ChEBI	-	hydrolysis
[Ref.: #43455]	sucrose ChEBI	-	builds acid from
[Ref.: #43455]	trehalose ChEBI	-	builds acid from
[Ref.: #43455]	urea ChEBI	-	hydrolysis
[Ref.: #43455]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance
[Ref.: #43455]	1 % sodium lactate				yes
[Ref.: #43455]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #43455]	amoxicillin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	cefadroxil ChEBI	yes	30	µg (disc)
[Ref.: #43455]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #43455]	ceftazidime ChEBI	yes	30	µg (disc)
[Ref.: #43455]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #43455]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43455]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #43455]	cloxacillin ChEBI	yes	1	µg (disc)
[Ref.: #43455]	co-trimoxazole ChEBI	yes	25	µg (disc)
[Ref.: #43455]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #43455]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	lithium chloride ChEBI				yes
[Ref.: #43455]	nalidixic acid ChEBI	yes	10	µg (disc)
[Ref.: #43455]	netilmycin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	nitrofurantoin ChEBI	yes	300	µg (disc)
[Ref.: #43455]	norfloxacin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	penicillin ChEBI	yes	60	µg (disc)
[Ref.: #43455]	potassium tellurite ChEBI				yes
[Ref.: #43455]	sodium butyrate ChEBI				yes
[Ref.: #43455]	sodium chloride ChEBI				yes
[Ref.: #43455]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43455]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43455]		acetoin ChEBI	no
[Ref.: #43455]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #43455]		acetoin ChEBI	-
[Ref.: #43455]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43455]	acid phosphatase	-	3.1.3.2
[Ref.: #43455]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43455]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43455]	beta-galactosidase	-	3.2.1.23
[Ref.: #43455]	catalase	+	1.11.1.6
[Ref.: #43455]	cystine arylamidase	+	3.4.11.3
[Ref.: #43455]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43455]	esterase	+
[Ref.: #43455]	esterase Lipase (C 8)	+
[Ref.: #43455]	leucine arylamidase	+	3.4.11.1
[Ref.: #43455]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43455]	trypsin	+	3.4.21.4
[Ref.: #43455]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43455]

Fatty acid	Percentage
C15:0 anteiso	37.3
C15:0 iso	28.8
C16:0	8.1
C14:0 iso	8
C14:0	3.8
C16:1ω11c	2.2
C16:0 iso	2.2
C17:0 anteiso	1.6
C17:0 iso	1.4

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43455]	Sample type/isolated from	mangrove sediment soil from the Salim Ali Bird Sanctuary
[Ref.: #43455]	Geographic location (country and/or sea, region)	State of Goa
[Ref.: #43455]	Country	India
[Ref.: #43455]	Country ISO 3 Code	IND
[Ref.: #43455]	Continent	Asia
[Ref.: #43455]	Geographic location	15.5130°/73.8700°

[Ref.: #67770]	Sample type/isolated from	Mangrove soil from the Salim Ali Bird Sanctuary
[Ref.: #67770]	Geographic location (country and/or sea, region)	Goa
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil sediment, Mangrove
[Ref.: #67771]	Country	India
[Ref.: #67771]	Country ISO 3 Code	IND
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN879431 (>99% sequence identity) for Domibacillus from Microbeatlas

Aquatic Samples	338
Soil Samples	2025
Animal Samples	1437
Plant Samples	185
Total Samples	3985

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43455]	Domibacillus sp. SAOS 44 partial 16S rRNA gene, isolate SAOS 44	LN879431		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Domibacillus mangrovi SAOS 44	GCA_001906925	contig	GenBank ENA	1714354 tax ID

[Ref.: #67770]

GC-content

40.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Domibacillus mangrovi SAOS 44 NCBI: GCA_001906925.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	75.985	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	91.795	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	72.876	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	90.62	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	86.21	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	79.573	no

Availability in culture collections External links

[Ref.: #43455]

Culture collection no.

KCTC 33820, MTCC 12571, DSM 100930, SAOS 44, JCM 32631

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Domibacillus mangrovi sp. nov. and Domibacillus epiphyticus sp. nov., isolated from marine habitats of the central west coast of India.	Verma A, Ojha AK, Dastager SG, Natarajan R, Mayilraj S, Krishnamurthi S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002085	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43455

Ashish Verma, Anup Kumar Ojha, Syed G. Dastager, Rameshkumar Natarajan, Shanmugam Mayilraj, Srinivasan Krishnamurthi: Domibacillus mangrovi sp. nov. and Domibacillus epiphyticus sp. nov., isolated from marine habitats of the central west coast of India. IJSEM 67: 3063 - 3070 2017 ( DOI 10.1099/ijsem.0.002085 , PubMed 28829034 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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Domibacillus mangrovi SAOS 44

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