Name: Glaciecola sp. 4H-3-7+YE-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140660

Type strain:

Species: Glaciecola sp.

Strain Designation: 4H-3-7+YE-5

NCBI tax ID(s): 1905676 (species)

Other strains from Glaciecola sp.

G. sp. 90PgV, DSM 17666
G. sp. EL-110, DSM 12540
G. sp. EL-201, DSM 12541
G. sp. JJM 10, DSM 21426
G. sp. JCM 17605

Section

Glaciecola sp. 4H-3-7+YE-5 is a Gram-negative bacterium that was isolated from Subseafloor sediments at Suruga Bay.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Glaciecola*
	Full Scientific Name (LPSN)	Glaciecola Bowman et al. 1998

Information on morphological and physiological properties Morphology

[Ref.: #43406]	Gram stain	negative

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43406]		cellulose ChEBI	+	hydrolysis
[Ref.: #43406]		xylan ChEBI	+	hydrolysis

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43406]	Sample type/isolated from	Subseafloor sediments at Suruga Bay
[Ref.: #43406]	Geographic location (country and/or sea, region)	Japan
[Ref.: #43406]	Country	Japan
[Ref.: #43406]	Country ISO 3 Code	JPN
[Ref.: #43406]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glaciecola sp. 4H-3-7+YE-5	983545.3	complete	PATRIC	983545 tax ID	*

[Ref.: #43406]

GC-content

45 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glaciecola sp. 4H-3-7+YE-5 PATRIC: 983545.3
[Ref.: #69480]	motile	yes	91.218	no
[Ref.: #69480]	flagellated	yes	82.547	no
[Ref.: #69480]	gram-positive	no	99.049	no
[Ref.: #69480]	anaerobic	no	97.806	no
[Ref.: #69480]	halophile	yes	66.054	no
[Ref.: #69480]	spore-forming	no	97.068	no
[Ref.: #69480]	thermophile	no	99.571	no
[Ref.: #69480]	glucose-util	yes	93.908	no
[Ref.: #69480]	aerobic	yes	84.766	no
[Ref.: #69480]	glucose-ferment	no	81.039	no

Availability in culture collections External links

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence of the marine cellulose- and xylan-degrading bacterium Glaciecola sp. strain 4H-3-7+YE-5.	Klippel B, Lochner A, Bruce DC, Davenport KW, Detter C, Goodwin LA, Han J, Han S, Land ML, Mikhailova N, Nolan M, Pennacchio L, Pitluck S, Tapia R, Woyke T, Wiebusch S, Basner A, Abe F, Horikoshi K, Keller M, Antranikian G	J Bacteriol	10.1128/JB.05468-11	2011	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43406

Barbara Klippel, Adriane Lochner, David C. Bruce, Karen Walston Davenport, Chris Detter, Lynne A. Goodwin, James Han, Shunsheng Han, Miriam L. Land, Natalia Mikhailova, Matt Nolan, Len Pennacchio, Sam Pitluck, Roxanne Tapia, Tanja Woyke, Sigrid Wiebusch, Alexander Basner, Fumiyoshi Abe, Koki Horikoshi, Martin Keller,and Garabed Antranikian: Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecola sp. Strain 4H-3-7 YE-5. IJSEM 193: 4547 - 4548 2011 ( DOI 10.1128/JB.05468-11 , PubMed 21705587 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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