Name: Parahaliea aestuarii S2-26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140575

Type strain:

Species: Parahaliea aestuarii

Strain Designation: S2-26

Culture col. no.: KACC 18801, JCM 31547

Strain history: C. O. Jeon; Dept. of Life Sci., Chung-Ang Univ., South Korea; S2-26.

NCBI tax ID(s): 1852021 (species)

Section

Parahaliea aestuarii S2-26 is an obligate aerobe, moderately halophilic, mesophilic bacterium that forms irregular colonies and was isolated from sediment of the Asan Bay estuary.

colony-forming
Gram-negative
motile
rod-shaped
mesophilic
moderately halophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Halieaceae*
	Genus	*Parahaliea*
	Species	**Parahaliea aestuarii**
	Full Scientific Name (LPSN)	Parahaliea aestuarii Jung et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43198]	Gram stain	negative

[Ref.: #43198]	Cell shape	rod-shaped

[Ref.: #43198]	Motility	yes

[Ref.: #43198]	Colony color	white
[Ref.: #43198]	Colony shape	irregular
[Ref.: #43198]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43198]

Culture medium

Marine agar (MA)

[Ref.: #43198]

Culture medium growth

[Ref.: #43198]

Culture medium

Nutrient agar (NA)

[Ref.: #43198]

Culture medium growth

[Ref.: #43198]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #43198]

Culture medium growth

[Ref.: #43198]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43198]

Culture medium growth

[Ref.: #43198]

Culture medium

R2A agar containing 2 % NaCl

[Ref.: #43198]

Culture medium growth

		Temperature
[Ref.: #43198]	optimum	25 °C
[Ref.: #43198]	growth	15-45 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #43198]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43198]			optimum	7.0-8.5
[Ref.: #43198]			growth	5.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43198]

Oxygen tolerance

obligate aerobe

[Ref.: #43198]

Halophily / tolerance level

moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43198]		NaCl		growth	0-8.0	%(w/v)
[Ref.: #43198]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43198]	adipate ChEBI	-	assimilation
[Ref.: #43198]	casein	-	hydrolysis
[Ref.: #43198]	D-glucose ChEBI	+	assimilation
[Ref.: #43198]	D-mannitol ChEBI	-	assimilation
[Ref.: #43198]	D-mannose ChEBI	-	assimilation
[Ref.: #43198]	decanoate ChEBI	-	assimilation
[Ref.: #43198]	esculin ChEBI	+	hydrolysis
[Ref.: #43198]	gelatin ChEBI	+	hydrolysis
[Ref.: #43198]	L-arabinose ChEBI	-	assimilation
[Ref.: #43198]	malate ChEBI	+	assimilation
[Ref.: #43198]	maltose ChEBI	-	assimilation
[Ref.: #43198]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43198]	nitrate ChEBI	+	reduction
[Ref.: #43198]	nitrite ChEBI	-	reduction
[Ref.: #43198]	phenylacetate ChEBI	+	assimilation
[Ref.: #43198]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43198]	sodium citrate ChEBI	-	assimilation
[Ref.: #43198]	starch ChEBI	+	hydrolysis
[Ref.: #43198]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43198]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43198]	tyrosine ChEBI	-	hydrolysis
[Ref.: #43198]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43198]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43198]	acid phosphatase	+	3.1.3.2
[Ref.: #43198]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43198]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43198]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43198]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43198]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43198]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43198]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43198]	beta-galactosidase	-	3.2.1.23
[Ref.: #43198]	beta-glucosidase	+	3.2.1.21
[Ref.: #43198]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43198]	catalase	+	1.11.1.6
[Ref.: #43198]	cystine arylamidase	+	3.4.11.3
[Ref.: #43198]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43198]	esterase (C 4)	+
[Ref.: #43198]	esterase Lipase (C 8)	+
[Ref.: #43198]	leucine arylamidase	+	3.4.11.1
[Ref.: #43198]	lipase (C 14)	-
[Ref.: #43198]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43198]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43198]	trypsin	-	3.4.21.4
[Ref.: #43198]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43198]

Fatty acid	Percentage
C17:1ω8c	26.7
C18:1ω7c / C18:1ω6c	15.5
C16:1ω7c / C16:1ω6c	14.8
C17:0	10.9
C16:0	7.8
C17:1ω6c	4.8
C11:0 3OH	3.7
C15:1ω8c	3.5
C11:0	2
C15:1ω6c	1.6
C13:0	1.6
C14:0	1.2

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	ceramide biosynthesis	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	alanine metabolism	93.1	27 of 29
[Ref.: #66794]	glutamate and glutamine metabolism	92.86	26 of 28
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	toluene degradation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	lipid metabolism	70.97	22 of 31
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	non-pathway related	68.42	26 of 38
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	androgen and estrogen metabolism	62.5	10 of 16
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	58.82	10 of 17
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	4-hydroxymandelate degradation	55.56	5 of 9
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	phenol degradation	55	11 of 20
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	degradation of pentoses	53.57	15 of 28
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	allantoin degradation	44.44	4 of 9
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	glycogen metabolism	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	vitamin B12 metabolism	35.29	12 of 34
[Ref.: #66794]	oxidative phosphorylation	35.16	32 of 91
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	carotenoid biosynthesis	22.73	5 of 22
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43198]	Sample type/isolated from	sediment of the Asan Bay estuary
[Ref.: #43198]	Country	Republic of Korea
[Ref.: #43198]	Country ISO 3 Code	KOR
[Ref.: #43198]	Continent	Asia
[Ref.: #43198]	Geographic location	36.0000°/126.0000°

[Ref.: #67770]	Sample type/isolated from	Sediment of the Asan Bay estuary in South Korea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX268609 (>99% sequence identity) for Parahaliea from Microbeatlas

Aquatic Samples	173
Soil Samples	7
Animal Samples	7
Plant Samples	3
Total Samples	190

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43198]	16S rRNA gene sequences	KX268609	1458	ENA	1852021 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parahaliea aestuarii S2-26	GCA_008064635	contig	GenBank	1852021 tax ID	*
[Ref.: #66792]	Parahaliea aestuarii S2-26	2887451271	draft	JGI IMG/M	1852021 tax ID	*

[Ref.: #43198]	GC-content	62.2 mol%	Thermal denaturation, fluorometry
[Ref.: #67770]	GC-content	62.2 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #43198]

Culture collection no.

KACC 18801, JCM 31547

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea.	Liu Y, Du J, Zhang J, Lai Q, Shao Z, Zhu H	J Microbiol	10.1007/s12275-020-9405-z	2020	*
Phylogeny	Parahaliea aestuarii sp. nov., isolated from the Asan Bay estuary.	Jung HS, Jeong SE, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001830	2017	*
Phylogeny	Halioglobus sediminis sp. nov., isolated from coastal sediment.	Han JR, Ye MQ, Wang C, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003366	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43198

Hye Su Jung, Sang Eun Jeong, Kyung Hyun Kim and Che Ok Jeon: Parahaliea aestuarii sp. nov., isolated from the Asan Bay estuary. IJSEM 67: 1431 - 1435 2017 ( DOI 10.1099/ijsem.0.001830 , PubMed 28141484 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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