Parahaliea aestuarii (KACC 18801, JCM 31547, S2-26)

Name: Parahaliea aestuarii (KACC 18801, JCM 31547, S2-26)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 140575

Type strain

Strain Designation S2-26

Culture col. no. KACC 18801 JCM 31547 S2-26

NCBI tax ID(s) 1852021

Special Collections JCM Literature strains

Links

Parahaliea aestuarii S2-26 is an obligate aerobe, moderately halophilic, mesophilic prokaryote that forms irregular colonies and was isolated from sediment of the Asan Bay estuary.

Gram-negative motile rod-shaped colony-forming obligate aerobe moderately halophilic mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 393790

JCM 31547

@ref 20215

Last LPSN update 2025-12-16 10:03:38

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Halieaceae

Genus Parahaliea

Species Parahaliea aestuarii

Full scientific name Parahaliea aestuarii Jung et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
43198	negative	rod-shaped
125439	negative			99.9

Colony morphology

@ref	Colony color	Colony shape	Medium used
43198	white	irregular	MA

Culture and growth conditions

Culture medium

@ref	Name	Growth
43198	Marine agar (MA)
43198	Nutrient agar (NA)
43198	LB (Luria-Bertani) MEDIUM
43198	Trypticase Soy Agar (TSA)
43198	R2A agar containing 2 % NaCl

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43198	positive	optimum	25	mesophilic
43198	positive	growth	15-45
67770	positive	growth	25	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43198	positive	optimum	7.0-8.5
43198	positive	growth	5.5-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

43198

Oxygen toleranceobligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43198	moderately halophilic	NaCl	positive	growth	0-8.0 %(w/v)
43198		NaCl	positive	optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43198	17128 ChEBI	adipate	-	assimilation
43198		casein	-	hydrolysis
43198	17634 ChEBI	D-glucose	+	assimilation
43198	16899 ChEBI	D-mannitol	-	assimilation
43198	16024 ChEBI	D-mannose	-	assimilation
43198	27689 ChEBI	decanoate	-	assimilation
43198	4853 ChEBI	esculin	+	hydrolysis
43198	5291 ChEBI	gelatin	+	hydrolysis
43198	30849 ChEBI	L-arabinose	-	assimilation
43198	25115 ChEBI	malate	+	assimilation
43198	17306 ChEBI	maltose	-	assimilation
43198	506227 ChEBI	N-acetylglucosamine	-	assimilation
43198	17632 ChEBI	nitrate	+	reduction
43198	16301 ChEBI	nitrite	-	reduction
43198	18401 ChEBI	phenylacetate	+	assimilation
43198	32032 ChEBI	potassium gluconate	-	assimilation
43198	53258 ChEBI	sodium citrate	-	assimilation
43198	28017 ChEBI	starch	+	hydrolysis
43198	53424 ChEBI	tween 20	+	hydrolysis
43198	53426 ChEBI	tween 80	-	hydrolysis
43198	18186 ChEBI	tyrosine	-	hydrolysis
43198	16199 ChEBI	urea	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43198	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43198	acid phosphatase	+	3.1.3.2
43198	alkaline phosphatase	+	3.1.3.1
43198	alpha-chymotrypsin	-	3.4.21.1
43198	alpha-fucosidase	-	3.2.1.51
43198	alpha-galactosidase	-	3.2.1.22
43198	alpha-glucosidase	-	3.2.1.20
43198	alpha-mannosidase	-	3.2.1.24
43198	arginine dihydrolase	-	3.5.3.6
43198	beta-galactosidase	-	3.2.1.23
43198	beta-glucosidase	+	3.2.1.21
43198	beta-glucuronidase	-	3.2.1.31
43198	catalase	+	1.11.1.6
43198	cystine arylamidase	+	3.4.11.3
43198	cytochrome oxidase	+	1.9.3.1
43198	esterase (C 4)	+
43198	esterase Lipase (C 8)	+
43198	leucine arylamidase	+	3.4.11.1
43198	lipase (C 14)	-
43198	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43198	naphthol-AS-BI-phosphohydrolase	+
43198	trypsin	-	3.4.21.4
43198	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	L-lactaldehyde degradation	100	3 of 3
66794	cyanate degradation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	quinate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	adipate degradation	100	2 of 2
66794	methylglyoxal degradation	100	5 of 5
66794	valine metabolism	100	9 of 9
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	glycine betaine biosynthesis	100	5 of 5
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ubiquinone biosynthesis	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	alanine metabolism	93.1	27 of 29
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	leucine metabolism	92.31	12 of 13
66794	phenylalanine metabolism	92.31	12 of 13
66794	proline metabolism	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	serine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	factor 420 biosynthesis	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	propionate fermentation	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	glycolysis	76.47	13 of 17
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	tyrosine metabolism	71.43	10 of 14
66794	lysine metabolism	71.43	30 of 42
66794	glutathione metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	arginine metabolism	70.83	17 of 24
66794	urea cycle	69.23	9 of 13
66794	purine metabolism	69.15	65 of 94
66794	pyrimidine metabolism	68.89	31 of 45
66794	degradation of sugar alcohols	68.75	11 of 16
66794	non-pathway related	68.42	26 of 38
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	methane metabolism	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	methionine metabolism	65.38	17 of 26
66794	vitamin B6 metabolism	63.64	7 of 11
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	degradation of sugar acids	60	15 of 25
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	phenol degradation	55	11 of 20
66794	pentose phosphate pathway	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	sulfate reduction	53.85	7 of 13
66794	degradation of pentoses	53.57	15 of 28
66794	polyamine pathway	52.17	12 of 23
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	cholesterol biosynthesis	45.45	5 of 11
66794	allantoin degradation	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	glycogen metabolism	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	vitamin B12 metabolism	35.29	12 of 34
66794	oxidative phosphorylation	35.16	32 of 91
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	vitamin B1 metabolism	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	ascorbate metabolism	27.27	6 of 22
66794	catecholamine biosynthesis	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22

Fatty acid profile

Metadata FA analysis

@ref

43198

Fatty acid	Percentage
C17:1ω8c	26.7
C18:1ω7c / C18:1ω6c	15.5
C16:1ω7c / C16:1ω6c	14.8
C17:0	10.9
C16:0	7.8
C17:1ω6c	4.8
C11:0 3OH	3.7
C15:1ω8c	3.5
C11:0	2
C15:1ω6c	1.6
C13:0	1.6
C14:0	1.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
43198	sediment of the Asan Bay estuary	Republic of Korea	KOR	Asia	36	126 36/126
67770	Sediment of the Asan Bay estuary in South Korea

Taxonmaps

69479

Global distribution of 16S sequence KX268609 (>99% sequence identity) for Parahaliea from Microbeatlas

Aquatic Samples	173
Soil Samples	7
Animal Samples	7
Plant Samples	3
Total Samples	190

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM806463v1 assembly for Parahaliea aestuarii S2-26	contig	GCA_008064635	1852021.4	2887451271	1852021	74.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43198	Parahaliea aestuarii strain S2-26 16S ribosomal RNA gene, partial sequence	KX268609	1458		1852021

GC content

@ref	GC-content (mol%)	Method
43198	62.2	Thermal denaturation, fluorometry
67770	62.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Parahaliea aestuarii S2-26
NCBI: GCA_008064635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	89.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	73.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parahaliea maris sp. nov., isolated from surface seawater and emended description of the genus Parahaliea.	Liu Y, Du J, Zhang J, Lai Q, Shao Z, Zhu H	J Microbiol	10.1007/s12275-020-9405-z	2020
Phylogeny	Parahaliea aestuarii sp. nov., isolated from the Asan Bay estuary.	Jung HS, Jeong SE, Kim KH, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001830	2017
Phylogeny	Halioglobus sediminis sp. nov., isolated from coastal sediment.	Han JR, Ye MQ, Wang C, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003366	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43198	Hye Su Jung, Sang Eun Jeong, Kyung Hyun Kim and Che Ok Jeon: Parahaliea aestuarii sp. nov., isolated from the Asan Bay estuary. IJSEM 67: 1431 - 1435 2017 ( DOI 10.1099/ijsem.0.001830 , PubMed 28141484 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Parahaliea aestuarii (KACC 18801, JCM 31547, S2-26)

Name and taxonomic classification