Name: Sulfurivermis fontis JG42
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140422

Type strain:

Species: Sulfurivermis fontis

Strain Designation: JG42

Culture col. no.: DSM 104776, NBRC 112696

Strain history: <- H. Kojima; Hokkaido University, Sapporo, Japan; JG42

NCBI tax ID(s): 1972068 (species)

SI-ID 401202

DSM 104776

Section

Sulfurivermis fontis JG42 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from hot spring microbial mat.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Thioprofundaceae*
	Genus	*Sulfurivermis*
	Species	**Sulfurivermis fontis**
	Full Scientific Name (LPSN)	Sulfurivermis fontis Kojima et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43508]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #43508]	Cell length	1.5-12 µm

[Ref.: #43508]	Cell width	0.4-0.6 µm

[Ref.: #43508]	Cell shape	rod-shaped

[Ref.: #43508]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %99.195

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43029]

Culture medium

SULFURITALEA MEDIUM (DSMZ Medium 1304)

[Ref.: #43029]

Culture medium growth

[Ref.: #43029]

Culture medium link

Medium recipe at MediaDive

[Ref.: #43029]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #43029]	growth	45 °C
[Ref.: #43508]	growth	25-50 °C
[Ref.: #43508]	optimum	42-48 °C

[Ref.: #43029]	Temperature range	thermophilic
[Ref.: #43508]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43508]			optimum	7.2-7.9
[Ref.: #43508]			growth	6.1-8.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43508]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.907

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43508]		NaCl		optimum	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43508]	ammonium ChEBI	+	nitrogen source
[Ref.: #43508]	nitrate ChEBI	+	nitrogen source
[Ref.: #43508]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43508]		catalase	-	1.11.1.6
[Ref.: #43508]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43029]	Sample type/isolated from	hot spring microbial mat
[Ref.: #43029]	Geographic location (country and/or sea, region)	Hokkaido, Sapporo, Jozankei hot spring
[Ref.: #43029]	Country	Japan
[Ref.: #43029]	Country ISO 3 Code	JPN
[Ref.: #43029]	Continent	Asia
[Ref.: #43029]	Geographic location	42.9647°/141.1630°

[Ref.: #43508]	Sample type/isolated from	microbial mat from Jozankei hot spring
[Ref.: #43508]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #43508]	Country	Japan
[Ref.: #43508]	Country ISO 3 Code	JPN
[Ref.: #43508]	Continent	Asia
[Ref.: #43508]	Geographic location	42.9650°/141.1630°
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Spring
#Environmental	#Microbial community	#Microbial mat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #43029]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43029]	Sulfurivermis fontis gene for 16S ribosomal RNA, partial sequence	LC225746	1460	ENA	1972068 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sulfurivermis fontis JG42	GCA_004001245	complete	GenBank	1972068 tax ID	*
[Ref.: #66792]	Sulfurivermis fontis JG42	2837194640	complete	JGI IMG/M	1972068 tax ID	*

[Ref.: #43029]

GC-content

65 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sulfurivermis fontis JG42 NCBI: GCA_004001245.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sulfurivermis fontis JG42 NCBI: GCA_004001245.1
[Ref.: #69480]	motile	yes	89.773	yes
[Ref.: #69480]	flagellated	yes	73.412	no
[Ref.: #69480]	gram-positive	no	99.502	yes
[Ref.: #69480]	anaerobic	no	77.666	yes
[Ref.: #69480]	aerobic	no	97.29	yes
[Ref.: #69480]	halophile	no	78.025	no
[Ref.: #69480]	spore-forming	no	93.624	no
[Ref.: #69480]	thermophile	yes	63.116	yes
[Ref.: #69480]	glucose-util	no	68.536	no
[Ref.: #69480]	glucose-ferment	no	85.014	no

Availability in culture collections External links

[Ref.: #43029]

Culture collection no.

DSM 104776, NBRC 112696

[Ref.: #96695]

SI-ID 401202

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurivermis fontis gen. nov., sp. nov., a sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov.	Kojima H, Watanabe M, Fukui M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002137	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43029

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104776

#43508

Hisaya Kojima, Miho Watanabe, Manabu Fukui: Sulfurivermis fontis gen. nov., sp. nov., a sulfur-oxidizing autotroph, and proposal of Thioprofundaceae fam. nov.. IJSEM 67: 3458 - 3461 2017 ( DOI 10.1099/ijsem.0.002137 , PubMed 28875900 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#96695

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401202.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Sulfurivermis fontis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF