Name: Echinicola shivajiensis AK12
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140406

Type strain:

Species: Echinicola shivajiensis

Strain Designation: AK12

Culture col. no.: DSM 24933, JCM 17847, MTCC 11083

Strain history: P. Anil Kumar AK12.

NCBI tax ID(s): 1035916 (species)

Special Collections

DSMZ
JCM

Section

Echinicola shivajiensis AK12 is a Gram-negative bacterium that was isolated from sediment from brakish water pond.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Echinicola*
	Species	"Echinicola shivajiensis"
	Full Scientific Name (LPSN)	Echinicola shivajiensis Srinivas et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.947

[Ref.: #69480]	Motility	no Confidence in %90

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43013]	Sample type/isolated from	sediment from brakish water pond
[Ref.: #43013]	Geographic location (country and/or sea, region)	West Bengal, Rampur
[Ref.: #43013]	Country	India
[Ref.: #43013]	Country ISO 3 Code	IND
[Ref.: #43013]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mud from brackish water pond at Rampur of West Bengal
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43013]	Echinicola shivajiensis partial 16S rRNA gene, type strain AK12	FR870465	1409	GenBank ENA	1035916 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Echinicola shivajiensis AK12	GCA_018642165	contig	GenBank ENA	1035916 tax ID	*

[Ref.: #43013]

GC-content

46.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Echinicola shivajiensis AK12 NCBI: GCA_018642165.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.947	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.709	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.723	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.941	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.472	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	no

Availability in culture collections External links

[Ref.: #43013]

Culture collection no.

DSM 24933, JCM 17847, MTCC 11083

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Echinicola arenosa sp. nov., isolated from marine sand.	Baek J, Weerawongwiwat V, Kim JH, Yoon JH, Lee JS, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02553-7	2021	*
Phylogeny	Echinicola shivajiensis sp. nov., a novel bacterium of the family "Cyclobacteriaceae" isolated from brackish water pond.	Srinivas TN, Kailash Tryambak B, Anil Kumar P	Antonie Van Leeuwenhoek	10.1007/s10482-011-9679-6	2011	*
Phylogeny	Echinicola sediminis sp. nov., a marine bacterium isolated from coastal sediment.	Lee DW, Lee AH, Lee H, Kim JJ, Khim JS, Yim UH, Kim BS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002118	2017	*
Phylogeny	Echinicola strongylocentroti sp. nov., isolated from a sea urchin Strongylocentrotus intermedius.	Jung YJ, Yang SH, Kwon KK, Bae SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001691	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43013

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24933

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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