Name: Echinicola shivajiensis AK12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140406

Type strain:

Species: Echinicola shivajiensis

Strain Designation: AK12

Culture col. no.: DSM 24933, JCM 17847, MTCC 11083

Strain history: P. Anil Kumar AK12.

NCBI tax ID(s): 1035916 (species)

Section

Echinicola shivajiensis AK12 is a mesophilic bacterium that was isolated from sediment from brakish water pond.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Echinicola*
	Species	"Echinicola shivajiensis"
	Full Scientific Name (LPSN)	Echinicola shivajiensis Srinivas et al. 2012

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43013]	Sample type/isolated from	sediment from brakish water pond
[Ref.: #43013]	Geographic location (country and/or sea, region)	West Bengal, Rampur
[Ref.: #43013]	Country	India
[Ref.: #43013]	Country ISO 3 Code	IND
[Ref.: #43013]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mud from brackish water pond at Rampur of West Bengal
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43013]	Echinicola shivajiensis partial 16S rRNA gene, type strain AK12	FR870465	1409	ENA	1035916 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Echinicola shivajiensis AK12	GCA_018642165	contig	GenBank	1035916 tax ID	*

[Ref.: #43013]

GC-content

46.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Echinicola shivajiensis AK12 NCBI: GCA_018642165.1
[Ref.: #69480]	flagellated	no	96.526	no
[Ref.: #69480]	gram-positive	no	97.98	no
[Ref.: #69480]	anaerobic	no	99.25	no
[Ref.: #69480]	aerobic	yes	88.853	no
[Ref.: #69480]	halophile	no	73.286	no
[Ref.: #69480]	spore-forming	no	95.948	no
[Ref.: #69480]	thermophile	no	98.882	no
[Ref.: #69480]	motile	no	87.658	no
[Ref.: #69480]	glucose-util	yes	90.719	no
[Ref.: #69480]	glucose-ferment	no	89.826	no

Availability in culture collections External links

[Ref.: #43013]

Culture collection no.

DSM 24933, JCM 17847, MTCC 11083

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Echinicola arenosa sp. nov., isolated from marine sand.	Baek J, Weerawongwiwat V, Kim JH, Yoon JH, Lee JS, Sukhoom A, Kim W	Arch Microbiol	10.1007/s00203-021-02553-7	2021	*
Phylogeny	Echinicola shivajiensis sp. nov., a novel bacterium of the family "Cyclobacteriaceae" isolated from brackish water pond.	Srinivas TN, Kailash Tryambak B, Anil Kumar P	Antonie Van Leeuwenhoek	10.1007/s10482-011-9679-6	2011	*
Phylogeny	Echinicola sediminis sp. nov., a marine bacterium isolated from coastal sediment.	Lee DW, Lee AH, Lee H, Kim JJ, Khim JS, Yim UH, Kim BS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002118	2017	*
Phylogeny	Echinicola strongylocentroti sp. nov., isolated from a sea urchin Strongylocentrotus intermedius.	Jung YJ, Yang SH, Kwon KK, Bae SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001691	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43013

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24933

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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